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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 289 290 291 292 293 294 295 296 297 ... 1720 1721 » 14601-14650 / 86044 show all
gduggal-snapfb	SNP	tv	HG002compoundhet	homalt	95.1607	99.2326	91.4099	54.5488	3362	26	3352	315	115	36.5079
ciseli-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	95.3693	99.2326	91.7955	63.9797	20044	155	20005	1788	579	32.3826
dgrover-gatk	SNP	tv	map_l125_m1_e0	homalt	99.5463	99.2321	99.8626	64.6877	5815	45	5815	8	5	62.5000
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.2455	99.2320	99.2591	40.7060	3876	30	3885	29	10	34.4828
jlack-gatk	SNP	ti	map_l100_m1_e0	het	96.3792	99.2318	93.6859	77.4968	29712	230	29705	2002	175	8.7413
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4749	99.2317	99.7192	49.7413	4262	33	4262	12	1	8.3333
raldana-dualsentieon	INDEL	D6_15	map_siren	homalt	98.8506	99.2308	98.4733	81.7803	129	1	129	2	1	50.0000
ckim-dragen	SNP	*	map_l150_m2_e0	homalt	99.4944	99.2307	99.7595	68.4345	11609	90	11614	28	25	89.2857
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.3923	99.2303	97.5682	62.2540	3610	28	3611	90	84	93.3333
cchapple-custom	INDEL	D6_15	HG002complexvar	homalt	98.6845	99.2301	98.1449	51.7682	1160	9	1111	21	21	100.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2303	99.2299	99.2308	68.4878	1675	13	1677	13	7	53.8462
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0661	99.2298	98.9030	75.7127	45350	352	45350	503	38	7.5547
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0661	99.2298	98.9030	75.7127	45350	352	45350	503	38	7.5547
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4572	99.2298	99.6856	78.8294	6055	47	6025	19	12	63.1579
gduggal-bwaplat	SNP	*	func_cds	het	99.4076	99.2295	99.5864	39.9773	11075	86	11075	46	4	8.6957
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1235	99.2295	99.0178	67.7817	13651	106	13609	135	117	86.6667
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1235	99.2295	99.0178	67.7817	13651	106	13609	135	117	86.6667
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3818	99.2284	99.5356	87.4927	1286	10	1286	6	6	100.0000
ckim-dragen	SNP	*	map_l100_m2_e1	het	98.1019	99.2281	97.0009	73.9476	46536	362	46542	1439	120	8.3391
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.9033	99.2281	98.5807	59.2778	7327	57	7293	105	100	95.2381
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.6165	99.2278	94.1392	60.2041	257	2	257	16	15	93.7500
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.9811	99.2278	94.8339	60.4956	257	2	257	14	13	92.8571
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7985	99.2278	94.4853	59.5238	257	2	257	15	14	93.3333
raldana-dualsentieon	INDEL	I1_5	map_l100_m1_e0	homalt	99.3237	99.2278	99.4197	79.1700	514	4	514	3	2	66.6667
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.4353	99.2278	93.7956	60.2322	257	2	257	17	16	94.1176
egarrison-hhga	INDEL	I1_5	map_l100_m1_e0	homalt	99.1321	99.2278	99.0366	81.5237	514	4	514	5	2	40.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.6165	99.2278	94.1392	60.2041	257	2	257	16	15	93.7500
gduggal-snapfb	INDEL	I1_5	map_l100_m1_e0	homalt	98.6564	99.2278	98.0916	86.1887	514	4	514	10	4	40.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4613	99.2277	99.6960	43.2493	6681	52	7543	23	17	73.9130
hfeng-pmm2	SNP	ti	map_l100_m0_e0	het	99.0752	99.2276	98.9232	72.7259	13875	108	13872	151	12	7.9470
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.3696	99.2268	97.5271	78.9884	28490	222	28632	726	57	7.8512
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.3696	99.2268	97.5271	78.9884	28490	222	28632	726	57	7.8512
dgrover-gatk	SNP	*	map_l100_m0_e0	*	99.2175	99.2266	99.2084	71.3904	32587	254	32583	260	57	21.9231
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3312	99.2264	99.4362	88.4220	1411	11	1411	8	7	87.5000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.1580	99.2264	99.0896	88.0562	1411	11	1415	13	6	46.1538
ckim-dragen	SNP	*	map_l100_m2_e0	het	98.0933	99.2263	96.9859	73.8971	46040	359	46046	1431	119	8.3159
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8871	99.2258	98.5507	63.9239	8331	65	8296	122	109	89.3443
dgrover-gatk	SNP	ti	map_l150_m2_e0	homalt	99.5587	99.2253	99.8942	70.9853	7557	59	7557	8	6	75.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3467	99.2253	99.4684	49.9176	11783	92	11787	63	54	85.7143
ckim-dragen	SNP	*	map_l125_m0_e0	homalt	99.4476	99.2253	99.6709	64.2590	6660	52	6663	22	19	86.3636
rpoplin-dv42	SNP	*	map_l125_m1_e0	homalt	99.4988	99.2251	99.7740	66.6415	16774	131	16774	38	37	97.3684
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4175	99.2248	99.6109	65.3171	256	2	256	1	0	0.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2248	99.2248	99.2248	62.6628	256	2	256	2	2	100.0000
ckim-vqsr	INDEL	*	map_l125_m2_e1	homalt	99.2248	99.2248	99.2248	87.3859	768	6	768	6	3	50.0000
ckim-vqsr	INDEL	D1_5	map_l100_m0_e0	homalt	99.0329	99.2248	98.8417	84.1880	256	2	256	3	2	66.6667
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	61.7910	256	2	256	0	0
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	62.0178	256	2	256	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	61.6192	256	2	256	0	0
hfeng-pmm1	INDEL	D1_5	map_l100_m0_e0	homalt	99.4175	99.2248	99.6109	81.1722	256	2	256	1	1	100.0000
ckim-gatk	INDEL	*	map_l125_m2_e1	homalt	99.1607	99.2248	99.0968	87.3717	768	6	768	7	4	57.1429

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