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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 288 289 290 291 292 293 294 295 296 ... 1720 1721 » 14551-14600 / 86044 show all
qzeng-custom	SNP	*	*	*	99.4966	99.2413	99.7533	22.5407	3031458	23176	3012983	7452	1530	20.5314
dgrover-gatk	SNP	ti	map_l100_m0_e0	homalt	99.5677	99.2411	99.8964	59.9180	7715	59	7715	8	6	75.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.6255	99.2410	98.0176	83.6632	523	4	445	9	9	100.0000
hfeng-pmm1	SNP	tv	map_l100_m2_e1	het	99.4686	99.2408	99.6974	66.3712	15817	121	15813	48	12	25.0000
astatham-gatk	INDEL	*	*	*	99.3424	99.2404	99.4446	59.9126	341925	2617	341788	1909	1550	81.1943
egarrison-hhga	SNP	*	map_l100_m1_e0	*	99.5435	99.2404	99.8485	62.8269	71853	550	71854	109	49	44.9541
rpoplin-dv42	SNP	*	map_l125_m2_e0	homalt	99.5066	99.2403	99.7743	69.1861	17243	132	17243	39	38	97.4359
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.5939	99.2396	99.9506	44.1181	4046	31	4050	2	1	50.0000
ltrigg-rtg2	INDEL	D1_5	*	*	99.4769	99.2395	99.7155	55.7210	145629	1116	145463	415	145	34.9398
ltrigg-rtg1	SNP	*	map_siren	*	99.4858	99.2395	99.7333	50.0979	145115	1112	145108	388	49	12.6289
hfeng-pmm1	SNP	tv	map_l100_m2_e0	het	99.4695	99.2394	99.7006	66.3242	15657	120	15653	47	12	25.5319
hfeng-pmm3	SNP	ti	map_l150_m2_e1	het	99.3308	99.2393	99.4225	76.8259	12916	99	12912	75	8	10.6667
hfeng-pmm3	SNP	ti	map_l150_m2_e0	het	99.3316	99.2392	99.4243	76.7413	12783	98	12779	74	8	10.8108
hfeng-pmm2	SNP	*	map_l125_m1_e0	het	99.0978	99.2392	98.9567	74.3753	28176	216	28170	297	25	8.4175
bgallagher-sentieon	SNP	ti	map_l150_m2_e0	het	98.8935	99.2392	98.5502	79.6724	12783	98	12779	188	30	15.9574
hfeng-pmm1	SNP	*	map_l125_m1_e0	*	99.4583	99.2389	99.6786	68.9911	44982	345	44976	145	41	28.2759
egarrison-hhga	SNP	*	map_siren	het	99.5365	99.2384	99.8364	54.0342	90298	693	90299	148	53	35.8108
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	94.6036	99.2382	90.3825	74.1987	2475	19	2481	264	1	0.3788
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4518	99.2381	99.6663	75.2850	5080	39	5078	17	10	58.8235
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2477	99.2381	99.2572	75.1119	5080	39	5078	38	20	52.6316
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.4756	99.2381	99.7143	61.1399	1042	8	1047	3	3	100.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4278	99.2381	99.6183	71.9185	521	4	522	2	0	0.0000
rpoplin-dv42	SNP	tv	map_l100_m2_e0	*	99.2885	99.2370	99.3401	66.0825	24842	191	24838	165	80	48.4848
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3760	99.2368	99.5156	55.1976	3901	30	3903	19	3	15.7895
hfeng-pmm2	SNP	ti	map_l150_m0_e0	*	98.9345	99.2367	98.6341	81.2825	7801	60	7799	108	13	12.0370
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3238	99.2366	99.4111	74.7171	1690	13	1688	10	4	40.0000
asubramanian-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6169	99.2366	100.0000	64.2366	520	4	520	0	0
ltrigg-rtg1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4898	99.2366	99.7443	67.0997	3510	27	3511	9	6	66.6667
mlin-fermikit	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.0556	99.2366	91.2127	73.6696	520	4	519	50	40	80.0000
gduggal-bwavard	INDEL	D6_15	map_l100_m2_e0	het	78.1594	99.2366	64.4670	90.5379	130	1	127	70	58	82.8571
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	73.7795	99.2361	58.7171	69.2191	1429	11	1428	1004	7	0.6972
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2766	99.2360	97.3356	73.4116	1169	9	1169	32	32	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.1528	99.2360	97.0930	73.2444	1169	9	1169	35	35	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0294	99.2360	96.8517	72.5744	1169	9	1169	38	38	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2353	99.2360	97.2546	73.3953	1169	9	1169	33	33	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.5724	99.2360	95.9638	73.1297	1169	9	1165	49	49	100.0000
dgrover-gatk	SNP	ti	map_l150_m1_e0	homalt	99.5618	99.2357	99.8901	68.6615	7271	56	7271	8	6	75.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0461	99.2354	98.8575	51.9477	1817	14	1817	21	0	0.0000
hfeng-pmm3	INDEL	I1_5	map_siren	*	99.4006	99.2346	99.5672	79.0750	2982	23	2991	13	3	23.0769
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4778	99.2346	99.7223	46.3498	3630	28	3591	10	1	10.0000
bgallagher-sentieon	INDEL	I1_5	map_siren	*	99.3016	99.2346	99.3688	80.4976	2982	23	2991	19	5	26.3158
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4416	99.2346	99.6494	43.8167	3630	28	5401	19	13	68.4211
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4518	99.2341	99.6703	69.5244	907	7	907	3	0	0.0000
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.1120	99.2341	97.0149	76.5207	907	7	910	28	1	3.5714
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3973	99.2341	99.5609	67.8773	907	7	907	4	0	0.0000
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8635	99.2337	98.4961	57.7259	11396	88	11396	174	164	94.2529
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3976	99.2333	99.5624	89.0421	906	7	910	4	4	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1242	99.2333	99.0153	88.2398	906	7	905	9	6	66.6667
dgrover-gatk	SNP	ti	map_l150_m2_e1	homalt	99.5631	99.2331	99.8953	71.0135	7634	59	7634	8	6	75.0000
egarrison-hhga	SNP	tv	HG002compoundhet	homalt	99.1596	99.2326	99.0866	43.1871	3362	26	3363	31	28	90.3226

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