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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
14451-14500 / 86044 show all
ckim-gatkINDELI1_5segduphet
96.8319
99.2565
94.5230
96.6704
5344535310
0.0000
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.8896
99.2565
98.5255
64.2421
29372229404410
22.7273
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4582
99.2565
99.6607
48.9520
2937222937101
10.0000
dgrover-gatkINDELI1_5segduphet
99.1652
99.2565
99.0741
95.4899
534453550
0.0000
hfeng-pmm2SNP*map_l125_m2_e0het
99.1177
99.2564
98.9794
75.5476
291002182909430025
8.3333
hfeng-pmm1SNP*map_l125_m2_e1*
99.4713
99.2564
99.6872
70.6981
468513514684514741
27.8912
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_diTR_11to50*
99.4110
99.2557
99.5668
65.5731
4801364827213
14.2857
ltrigg-rtg1SNPtimap_siren*
99.5060
99.2556
99.7576
49.1435
996077479960124238
15.7025
bgallagher-sentieonINDELD1_5map_l100_m1_e0het
98.5653
99.2556
97.8845
84.2173
120091203264
15.3846
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0580
99.2555
98.8612
71.4717
37332837334343
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0580
99.2555
98.8612
71.4717
37332837334343
100.0000
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.8586
99.2554
94.5749
83.0098
906568906552022
4.2308
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.8586
99.2554
94.5749
83.0098
906568906552022
4.2308
ckim-dragenSNPtimap_l100_m2_e0het
98.1149
99.2554
97.0004
73.1660
303942283039794087
9.2553
ltrigg-rtg2INDEL**homalt
99.5524
99.2554
99.8512
52.3128
124239932124115185162
87.5676
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.9190
99.2554
96.6182
68.9966
2666202657934
4.3011
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6262
99.2553
100.0000
69.5205
239918237100
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5418
99.2552
99.8299
54.5384
14660110146752512
48.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5687
99.2552
99.8842
53.3003
14660110146641712
70.5882
dgrover-gatkSNP*map_l100_m0_e0het
99.0469
99.2549
98.8398
75.0691
210471582104324748
19.4332
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3113
99.2548
99.3680
72.5172
3596273616235
21.7391
egarrison-hhgaSNP*map_l100_m2_e1*
99.5464
99.2547
99.8398
64.7282
741805577418111950
42.0168
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3985
99.2535
99.5440
74.5809
6395048163963293257
87.7133
ghariani-varprowlINDELD1_5map_sirenhet
93.3499
99.2534
88.1092
86.6204
2260172260305111
36.3934
ckim-dragenSNPtvmap_l250_m2_e0homalt
99.1471
99.2529
99.0415
84.5432
930793097
77.7778
hfeng-pmm3SNPtvmap_l100_m0_e0het
99.3072
99.2523
99.3623
70.7621
7168547167464
8.6957
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4081
99.2523
99.5645
82.9173
4115314115188
44.4444
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4442
99.2523
99.6368
83.0397
4115314115157
46.6667
dgrover-gatkSNPtvmap_l125_m2_e0homalt
99.5582
99.2521
99.8662
67.1591
597245597285
62.5000
astatham-gatkINDELI1_5**
99.4616
99.2520
99.6722
58.6147
1495371127149586492402
81.7073
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.3640
99.2519
99.4764
81.8355
398338021
50.0000
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.1130
99.2516
98.9748
72.3987
2122162124224
18.1818
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5122
99.2515
99.7743
48.6278
132610132630
0.0000
astatham-gatkSNPti**
99.6161
99.2515
99.9833
17.5605
2069900156112069836345101
29.2754
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4749
99.2515
99.6992
51.2106
132610132640
0.0000
qzeng-customSNPti**
99.5194
99.2515
99.7887
20.8361
20699071561120631264368997
22.8251
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.1405
99.2515
99.0299
57.3248
1326101327133
23.0769
hfeng-pmm2SNPtvmap_l125_m2_e1het
99.0261
99.2514
98.8018
75.8168
10474791047212711
8.6614
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50het
99.2504
99.2513
99.2495
62.6333
156421181547211778
66.6667
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.5816
99.2511
94.0520
47.6931
2783212783176175
99.4318
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
90.9626
99.2511
83.9517
58.3543
2783212783532532
100.0000
cchapple-customINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.2452
99.2509
99.2395
60.2118
265226122
100.0000
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4622
99.2509
99.6743
63.1894
265230611
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4350
99.2509
99.6198
57.2358
265226210
0.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4350
99.2509
99.6198
58.8419
265226210
0.0000
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.0654
99.2509
98.8806
66.5000
265226533
100.0000
hfeng-pmm1SNP*map_l125_m2_e0*
99.4680
99.2509
99.6861
70.6559
463733504636714641
28.0822
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6241
99.2509
100.0000
64.3909
265226600
eyeh-varpipeSNP*map_l250_m0_e0*
98.0582
99.2506
96.8941
94.2786
2119162059664
6.0606
jlack-gatkSNPtimap_l100_m2_e1het
96.4266
99.2506
93.7588
78.7315
30728232307212045177
8.6553