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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 284 285 286 287 288 289 290 291 292 ... 1720 1721 » 14351-14400 / 86044 show all
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.6744	99.2727	96.1268	69.7551	819	6	819	33	32	96.9697
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.6744	99.2727	96.1268	69.7551	819	6	819	33	32	96.9697
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.5802	99.2727	94.0299	72.0565	819	6	819	52	51	98.0769
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.5802	99.2727	94.0299	72.0565	819	6	819	52	51	98.0769
hfeng-pmm2	INDEL	I1_5	*	*	99.4998	99.2726	99.7280	57.5644	149568	1096	149613	408	306	75.0000
jli-custom	INDEL	D1_5	HG002complexvar	*	99.5191	99.2725	99.7668	57.5505	32477	238	32518	76	59	77.6316
eyeh-varpipe	SNP	ti	map_l250_m2_e1	het	98.5825	99.2725	97.9021	91.2682	3275	24	3220	69	4	5.7971
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5458	99.2722	99.8208	49.8653	6684	49	6686	12	7	58.3333
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5258	99.2722	99.7807	70.9677	1364	10	1365	3	1	33.3333
ckim-dragen	SNP	tv	map_l100_m0_e0	homalt	99.4789	99.2720	99.6867	59.7308	3818	28	3818	12	10	83.3333
ckim-vqsr	INDEL	D16_PLUS	*	het	97.9651	99.2719	96.6923	79.4267	3136	23	2894	99	69	69.6970
egarrison-hhga	SNP	ti	map_l100_m1_e0	*	99.5648	99.2719	99.8594	62.6430	47582	349	47583	67	31	46.2687
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3925	99.2718	99.5134	71.4682	818	6	818	4	1	25.0000
hfeng-pmm2	SNP	ti	map_l125_m2_e1	het	99.1807	99.2718	99.0899	75.4485	18948	139	18944	174	14	8.0460
hfeng-pmm1	INDEL	D1_5	*	het	99.5580	99.2715	99.8461	55.4481	86936	638	86940	134	51	38.0597
ckim-dragen	INDEL	*	HG002compoundhet	homalt	46.1333	99.2711	30.0488	84.8211	681	5	677	1576	1573	99.8096
gduggal-bwaplat	SNP	ti	func_cds	het	99.4112	99.2709	99.5519	36.3268	8442	62	8442	38	4	10.5263
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.3525	99.2706	99.4347	70.0110	2994	22	2990	17	6	35.2941
eyeh-varpipe	SNP	ti	map_l250_m0_e0	*	98.2427	99.2701	97.2364	94.1737	1360	10	1337	38	1	2.6316
ndellapenna-hhga	SNP	*	map_l125_m0_e0	homalt	99.5815	99.2700	99.8951	66.7961	6663	49	6663	7	6	85.7143
hfeng-pmm1	INDEL	I1_5	*	*	99.5147	99.2699	99.7606	57.3300	149564	1100	149609	359	252	70.1950
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
jlack-gatk	SNP	*	map_l100_m2_e0	het	95.7132	99.2694	92.4029	79.6895	46060	339	46049	3786	266	7.0259
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	97.8994	99.2682	96.5678	63.0857	2713	20	2701	96	92	95.8333
jmaeng-gatk	SNP	ti	segdup	*	98.6795	99.2681	98.0979	93.0686	19394	143	19392	376	6	1.5957
raldana-dualsentieon	INDEL	D1_5	*	het	99.5220	99.2680	99.7773	56.3227	86933	641	86937	194	136	70.1031
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.5688	99.2675	97.8799	72.6755	5556	41	5540	120	110	91.6667
hfeng-pmm3	INDEL	I1_5	*	*	99.5494	99.2672	99.8332	56.8186	149560	1104	149606	250	187	74.8000
ckim-dragen	SNP	ti	map_l125_m2_e1	homalt	99.5580	99.2669	99.8508	63.2612	11374	84	11379	17	16	94.1176
hfeng-pmm3	INDEL	*	map_l100_m1_e0	homalt	99.2665	99.2665	99.2665	80.9205	1218	9	1218	9	4	44.4444
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.4418	99.2664	97.6308	83.1720	9066	67	9066	220	10	4.5455
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.4418	99.2664	97.6308	83.1720	9066	67	9066	220	10	4.5455
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4495	99.2663	99.6334	73.6527	1353	10	1359	5	3	60.0000
dgrover-gatk	SNP	tv	map_l100_m0_e0	het	98.8895	99.2661	98.5157	76.1747	7169	53	7168	108	20	18.5185
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1021	99.2658	98.9390	69.0925	13656	101	13614	146	113	77.3973
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1021	99.2658	98.9390	69.0925	13656	101	13614	146	113	77.3973
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.6331	99.2657	98.0084	78.2327	14464	107	14616	297	18	6.0606
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3320	99.2657	99.3984	79.0065	1487	11	1487	9	2	22.2222
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.6331	99.2657	98.0084	78.2327	14464	107	14616	297	18	6.0606
gduggal-snapplat	SNP	*	func_cds	het	99.3276	99.2653	99.3900	36.7079	11079	82	11079	68	4	5.8824
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.7214	99.2652	98.1834	66.0056	12429	92	12269	227	213	93.8326
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5902	99.2647	99.9178	64.5481	1215	9	1215	1	0	0.0000
hfeng-pmm2	SNP	*	map_l125_m2_e1	het	99.1256	99.2645	98.9871	75.5812	29422	218	29416	301	25	8.3057
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
jmaeng-gatk	SNP	ti	*	homalt	99.6264	99.2642	99.9912	16.0789	797129	5909	797120	70	46	65.7143
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3736	99.2639	99.4836	88.1512	2697	20	2697	14	13	92.8571
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3553	99.2639	99.4469	87.8858	2697	20	2697	15	13	86.6667
hfeng-pmm2	SNP	ti	map_l125_m2_e0	het	99.1742	99.2636	99.0849	75.4183	18737	139	18733	173	14	8.0925

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