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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
14251-14300 / 86044 show all
hfeng-pmm1SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6121
99.2918
99.9344
37.2432
10656761065671
14.2857
astatham-gatkINDEL*HG002complexvar*
99.4827
99.2916
99.6745
58.3541
7639354576257249212
85.1406
dgrover-gatkINDELD1_5map_siren*
99.2924
99.2916
99.2932
82.3565
3504253512255
20.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5998
99.2908
99.9108
42.6598
11208112011
100.0000
jli-customINDELD16_PLUS*homalt
99.0858
99.2908
98.8817
67.1754
16801216801913
68.4211
raldana-dualsentieonSNP*map_l150_m0_e0homalt
99.5464
99.2908
99.8033
71.7833
406029406085
62.5000
raldana-dualsentieonSNPtvmap_l125_m2_e0*
99.2122
99.2904
99.1340
71.8789
16372117163701434
2.7972
ckim-dragenSNP*map_l100_m1_e0*
98.6742
99.2901
98.0660
67.7530
71889514719001418151
10.6488
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2629
99.2900
99.2358
50.5266
1818131818140
0.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.0362
99.2900
96.8136
69.3472
1818131823602
3.3333
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.7961
99.2900
96.3466
63.0116
1818131846700
0.0000
ciseli-customSNPtvsegduphomalt
97.7133
99.2897
96.1862
90.1152
321523320312772
56.6929
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.6266
99.2892
97.9729
65.4849
124328912276254243
95.6693
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.6431
99.2888
100.0000
46.4313
698569800
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.6431
99.2888
100.0000
35.3991
698568800
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
91.9883
99.2888
85.6879
49.6867
7399537430124143
3.4650
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4458
99.2885
99.6035
87.7940
12569125655
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4064
99.2885
99.5246
88.1335
12569125666
100.0000
dgrover-gatkSNPtvmap_l125_m1_e0*
99.2231
99.2882
99.1581
73.2603
159021141590013527
20.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3603
99.2881
99.4326
81.7523
68344968343915
38.4615
jlack-gatkSNPtimap_sirenhomalt
99.6031
99.2879
99.9204
49.0602
37646270376403020
66.6667
jlack-gatkINDELD1_5HG002complexvar*
99.4067
99.2878
99.5259
58.0276
324822333253915592
59.3548
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.5363
99.2878
99.7860
56.6980
16312117163183521
60.0000
bgallagher-sentieonSNPtimap_l125_m0_e0homalt
99.5535
99.2875
99.8209
66.4916
445932445986
75.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5382
99.2871
99.7905
44.9407
6685486668144
28.5714
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.1397
99.2867
95.0836
54.6384
2784202785144133
92.3611
egarrison-hhgaSNPtimap_sirenhet
99.5580
99.2867
99.8308
53.2460
619374456193810538
36.1905
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.8636
99.2867
98.4441
47.1402
27842027844443
97.7273
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2545
99.2866
99.2223
77.4843
1531111531129
75.0000
ghariani-varprowlSNPtvmap_sirenhomalt
99.3038
99.2865
99.3211
57.8404
171171231711711771
60.6838
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8791
99.2863
98.4753
80.3955
144671041446722414
6.2500
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8791
99.2863
98.4753
80.3955
144671041446722414
6.2500
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3555
99.2863
97.4421
79.1072
144671041447638019
5.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3555
99.2863
97.4421
79.1072
144671041447638019
5.0000
hfeng-pmm3INDEL*map_l100_m2_e0homalt
99.2469
99.2863
99.2076
82.1525
125291252104
40.0000
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.8247
99.2858
94.4828
49.5258
9453689453552547
99.0942
jlack-gatkSNP*map_sirenhomalt
99.6008
99.2857
99.9179
50.5286
54762394547534530
66.6667
bgallagher-sentieonSNP*map_l125_m0_e0homalt
99.5370
99.2849
99.7904
67.2503
66644866641410
71.4286
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6282
99.2848
99.9740
70.9201
388728383911
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5328
99.2846
99.7822
62.2610
27480198274916036
60.0000
egarrison-hhgaSNPtimap_l100_m2_e1*
99.5683
99.2846
99.8537
64.5157
49131354491327232
44.4444
ckim-vqsrINDEL*map_sirenhomalt
99.3599
99.2844
99.4355
81.7137
2636192642158
53.3333
ckim-gatkINDEL*map_sirenhomalt
99.3412
99.2844
99.3980
81.7081
2636192642169
56.2500
rpoplin-dv42SNPtimap_l100_m1_e0*
99.4597
99.2844
99.6356
62.6996
4758834347581174118
67.8161
bgallagher-sentieonSNP*map_l150_m2_e1het
98.8048
99.2830
98.3312
79.8100
202171462021134350
14.5773
raldana-dualsentieonINDELI1_5*het
99.5073
99.2827
99.7331
57.9285
7847456778457210142
67.6190
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4012
99.2823
99.5204
47.6788
415341521
50.0000