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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
14201-14250 / 86044 show all
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5211
99.2995
97.7547
53.9013
56745661313
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5230
99.2995
97.7586
67.1946
56745671313
100.0000
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.4375
99.2995
97.5904
67.0261
56745671414
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5230
99.2995
97.7586
67.1946
56745671313
100.0000
dgrover-gatkSNPtimap_l125_m1_e0het
99.2150
99.2992
99.1308
75.9575
181381281813415933
20.7547
ckim-dragenSNPtvmap_l250_m1_e0homalt
99.1254
99.2991
98.9523
83.2944
850685097
77.7778
hfeng-pmm3SNPtvmap_l125_m1_e0het
99.3576
99.2988
99.4165
70.9308
100557110053595
8.4746
gduggal-bwaplatSNPtifunc_cdshomalt
99.6481
99.2986
100.0000
20.6003
523837523800
gduggal-snapvardSNPtifunc_cdshomalt
99.6385
99.2986
99.9808
20.4816
523837521711
100.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5544
99.2984
99.8118
74.6933
212315212141
25.0000
gduggal-bwafbSNPtimap_l100_m1_e0homalt
99.5923
99.2984
99.8880
61.5927
17834126178342012
60.0000
jli-customSNPtvmap_l100_m1_e0*
99.4197
99.2980
99.5417
62.1631
243291722432811230
26.7857
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.4850
99.2977
99.6730
35.9284
39592839621312
92.3077
raldana-dualsentieonSNPtvmap_l125_m2_e1*
99.2171
99.2976
99.1368
71.9418
16540117165381444
2.7778
hfeng-pmm3INDEL*map_l100_m2_e1homalt
99.2587
99.2974
99.2200
82.2364
127291272104
40.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.2965
99.2968
99.2963
87.3102
1412101411106
60.0000
ckim-dragenSNPtimap_l100_m2_e1*
98.6777
99.2968
98.0664
68.9837
4913734849145969108
11.1455
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3666
99.2968
99.4366
88.7015
141210141287
87.5000
jlack-gatkINDEL*HG002complexvarhet
99.3807
99.2967
99.4647
57.6016
4588732545527245124
50.6122
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4326
99.2967
99.5689
75.2558
50833650812210
45.4545
ckim-gatkINDEL*map_l125_m0_e0homalt
98.7741
99.2958
98.2578
88.6874
282228254
80.0000
ckim-vqsrINDEL*map_l125_m0_e0homalt
98.9474
99.2958
98.6014
88.7224
282228243
75.0000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
86.2766
99.2958
76.2757
84.3842
8466852265167
63.0189
ltrigg-rtg1INDEL*map_l125_m0_e0homalt
98.9449
99.2958
98.5965
86.3047
282228142
50.0000
hfeng-pmm3INDEL*map_l125_m0_e0homalt
98.7741
99.2958
98.2578
85.7498
282228253
60.0000
hfeng-pmm2INDEL*map_l125_m0_e0homalt
98.7741
99.2958
98.2578
86.8469
282228254
80.0000
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5294
99.2958
99.7642
84.2672
846684622
100.0000
astatham-gatkINDEL*map_l125_m0_e0homalt
98.6014
99.2958
97.9167
88.3589
282228264
66.6667
bgallagher-sentieonINDEL*map_l125_m0_e0homalt
98.6014
99.2958
97.9167
88.2112
282228264
66.6667
hfeng-pmm1INDELI1_5HG002complexvar*
99.5778
99.2956
99.8615
56.6148
33128235331714629
63.0435
hfeng-pmm3INDELI1_5HG002complexvar*
99.5912
99.2956
99.8886
56.4158
33128235331723724
64.8649
ckim-dragenSNPtimap_l100_m2_e0*
98.6738
99.2954
98.0599
68.9474
4861634548624962107
11.1227
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.1201
99.2954
98.9455
75.2393
1691121689183
16.6667
gduggal-bwafbSNPtimap_l100_m2_e0homalt
99.5892
99.2954
99.8846
63.9034
18180129181802113
61.9048
ckim-dragenSNP*map_l100_m2_e1*
98.6686
99.2949
98.0501
69.8284
74210527742211476153
10.3659
ckim-dragenSNPtimap_l100_m1_e0*
98.6835
99.2948
98.0797
66.8879
4759333847601932106
11.3734
qzeng-customSNPtv*homalt
99.5964
99.2947
99.8999
20.4155
3744632660372209373242
64.8794
rpoplin-dv42SNPtimap_l100_m2_e1*
99.4666
99.2947
99.6390
64.7230
4913634949129178121
67.9775
hfeng-pmm1SNPtvmap_l125_m1_e0*
99.4714
99.2945
99.6491
69.3117
15903113159015616
28.5714
hfeng-pmm2SNPtvmap_l150_m1_e0*
99.1035
99.2944
98.9134
76.5808
10835771083311914
11.7647
ckim-dragenSNP*map_l100_m2_e0*
98.6634
99.2943
98.0406
69.7855
73442522734531468152
10.3542
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5867
99.2941
99.8810
43.2816
844683910
0.0000
jpowers-varprowlSNP*HG002complexvar*
99.4683
99.2937
99.6435
20.7160
749051532874940426811602
59.7538
eyeh-varpipeSNPtimap_l150_m0_e0het
98.2368
99.2937
97.2021
84.3948
50613649681434
2.7972
rpoplin-dv42SNPtimap_l100_m2_e0*
99.4660
99.2933
99.6392
64.7198
4861534648608176120
68.1818
ckim-dragenSNPtvmap_l100_m2_e0*
98.6448
99.2929
98.0051
71.3118
248561772485950645
8.8933
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6057
99.2925
99.9209
50.5187
252618252620
0.0000
jpowers-varprowlSNP*func_cdshet
99.1057
99.2922
98.9199
32.1729
1108279110821212
1.6529
ckim-dragenSNPtvmap_l100_m2_e1*
98.6522
99.2920
98.0206
71.3656
251041792510750745
8.8757
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3846
99.2919
99.4776
66.9410
3225233237173
17.6471