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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 279 280 281 282 283 284 285 286 287 ... 1720 1721 » 14101-14150 / 86044 show all
dgrover-gatk	SNP	ti	map_l125_m2_e1	het	99.2226	99.3137	99.1317	77.0880	18956	131	18952	166	34	20.4819
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.7350	99.3135	86.9739	48.2902	434	3	434	65	65	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.7350	99.3135	86.9739	48.6097	434	3	434	65	65	100.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6556	99.3135	100.0000	34.6057	1302	9	1302	0	0
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	91.0808	99.3135	84.1085	47.7204	434	3	434	82	82	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.7350	99.3135	86.9739	48.2902	434	3	434	65	65	100.0000
mlin-fermikit	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.1773	99.3135	93.2331	71.4592	1736	12	1736	126	98	77.7778
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.6361	99.3135	86.8000	48.5597	434	3	434	66	66	100.0000
jlack-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5984	99.3135	99.8849	60.1010	1736	12	1736	2	2	100.0000
hfeng-pmm3	SNP	*	map_l125_m1_e0	het	99.4129	99.3132	99.5129	70.9946	28197	195	28191	138	13	9.4203
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	94.0417	99.3129	89.3019	78.9695	45388	314	43340	5192	210	4.0447
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	94.0417	99.3129	89.3019	78.9695	45388	314	43340	5192	210	4.0447
asubramanian-gatk	INDEL	D1_5	HG002compoundhet	homalt	76.5563	99.3127	62.2845	86.2762	289	2	289	175	165	94.2857
hfeng-pmm3	INDEL	D1_5	HG002compoundhet	homalt	91.1672	99.3127	84.2566	74.7609	289	2	289	54	53	98.1481
hfeng-pmm3	SNP	tv	map_l150_m1_e0	*	99.3718	99.3127	99.4310	74.1360	10837	75	10835	62	9	14.5161
hfeng-pmm2	INDEL	D1_5	HG002compoundhet	homalt	89.0601	99.3127	80.7263	78.1840	289	2	289	69	69	100.0000
jlack-gatk	SNP	ti	*	hetalt	98.8034	99.3127	98.2993	52.8846	578	4	578	10	10	100.0000
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2357	99.3126	99.1588	62.5047	10836	75	10845	92	50	54.3478
hfeng-pmm3	SNP	ti	map_l250_m0_e0	homalt	99.0847	99.3119	98.8584	92.1463	433	3	433	5	2	40.0000
hfeng-pmm1	SNP	ti	map_l250_m0_e0	homalt	99.0847	99.3119	98.8584	92.1786	433	3	433	5	2	40.0000
hfeng-pmm2	SNP	ti	map_l250_m0_e0	homalt	99.0847	99.3119	98.8584	92.1786	433	3	433	5	2	40.0000
rpoplin-dv42	SNP	ti	map_l125_m1_e0	homalt	99.5372	99.3119	99.7635	66.3061	10969	76	10969	26	25	96.1538
astatham-gatk	INDEL	*	HG002complexvar	het	99.5588	99.3119	99.8070	57.7885	45894	318	45516	88	55	62.5000
bgallagher-sentieon	SNP	ti	map_l150_m0_e0	homalt	99.5462	99.3118	99.7817	72.6486	2742	19	2742	6	5	83.3333
eyeh-varpipe	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1613	99.3118	99.0113	50.7900	20060	139	19027	190	66	34.7368
hfeng-pmm2	INDEL	D1_5	*	het	99.5604	99.3114	99.8107	56.3200	86971	603	86977	165	71	43.0303
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4003	99.3113	99.4894	56.4059	6633	46	6625	34	32	94.1176
rpoplin-dv42	INDEL	D1_5	*	*	99.4429	99.3110	99.5751	58.2332	145734	1011	145779	622	549	88.2637
mlin-fermikit	SNP	ti	func_cds	*	99.5022	99.3109	99.6942	17.8687	13692	95	13692	42	34	80.9524
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5098	99.3105	99.7100	37.0828	10658	74	10658	31	2	6.4516
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	89.1252	99.3103	80.8349	77.3820	432	3	426	101	62	61.3861
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5619	99.3100	99.8151	62.4675	2159	15	2159	4	0	0.0000
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	72.2413	99.3100	56.7681	68.0924	2159	15	2164	1648	10	0.6068
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6538	99.3100	100.0000	62.2948	2159	15	2159	0	0
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5711	99.3100	99.8335	74.5893	3598	25	3598	6	2	33.3333
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6538	99.3100	100.0000	62.6082	2159	15	2159	0	0
dgrover-gatk	SNP	*	map_l125_m1_e0	het	99.1524	99.3097	98.9956	76.1623	28196	196	28190	286	55	19.2308
jli-custom	SNP	ti	map_l125_m0_e0	homalt	99.5980	99.3097	99.8880	64.8868	4460	31	4460	5	5	100.0000
ndellapenna-hhga	SNP	ti	map_l125_m0_e0	homalt	99.6092	99.3097	99.9104	66.0377	4460	31	4460	4	4	100.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	95.2637	99.3096	91.5345	77.9592	30928	215	29962	2771	142	5.1245
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.2637	99.3096	91.5345	77.9592	30928	215	29962	2771	142	5.1245
jlack-gatk	SNP	ti	HG002compoundhet	hetalt	99.6534	99.3092	100.0000	21.8750	575	4	575	0	0
bgallagher-sentieon	SNP	tv	map_l150_m1_e0	het	98.5918	99.3090	97.8850	78.8267	6898	48	6896	149	20	13.4228
jli-custom	SNP	tv	map_l100_m2_e0	*	99.4221	99.3089	99.5355	64.2177	24860	173	24859	116	30	25.8621
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2559	99.3087	99.2032	69.9329	3735	26	3735	30	29	96.6667
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2559	99.3087	99.2032	69.9329	3735	26	3735	30	29	96.6667
dgrover-gatk	SNP	tv	map_l125_m2_e0	*	99.2454	99.3086	99.1822	74.7468	16375	114	16373	135	27	20.0000
jmaeng-gatk	SNP	tv	segdup	*	98.1687	99.3085	97.0548	94.6921	8473	59	8469	257	8	3.1128
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.3569	99.3083	99.4056	69.7301	2010	14	2007	12	5	41.6667
raldana-dualsentieon	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	75.4415	287	2	287	5	4	80.0000

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