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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
14001-14050 / 86044 show all
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3176
99.3243
99.3109
72.4414
13239129797
77.7778
bgallagher-sentieonINDELD1_5map_l125_m0_e0homalt
98.9899
99.3243
98.6577
87.1330
147114722
100.0000
ckim-gatkINDELD1_5map_l125_m0_e0homalt
98.9899
99.3243
98.6577
87.4685
147114722
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3173
99.3243
99.3103
72.7614
13239129697
77.7778
hfeng-pmm2INDELD1_5map_l125_m0_e0homalt
98.9899
99.3243
98.6577
85.6868
147114722
100.0000
hfeng-pmm3INDELD1_5map_l100_m1_e0homalt
99.5766
99.3243
99.8302
79.6546
588458811
100.0000
hfeng-pmm3INDELD1_5map_l125_m0_e0homalt
99.3243
99.3243
99.3243
84.1880
147114711
100.0000
qzeng-customSNP**homalt
99.6134
99.3243
99.9041
17.3884
1172188797411620901115707
63.4081
rpoplin-dv42INDELD1_5map_l125_m0_e0homalt
98.6577
99.3243
98.0000
87.4896
147114733
100.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.5900
99.3241
97.8667
64.6435
2939202936644
6.2500
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4249
99.3241
99.5259
48.4732
2939202939142
14.2857
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3913
99.3241
99.4585
49.1657
2939202939163
18.7500
jli-customSNPtimap_l100_m1_e0*
99.4974
99.3240
99.6713
60.4603
476073244760515750
31.8471
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.4992
99.3239
93.8307
37.7780
7198497194473470
99.3658
gduggal-bwafbSNP*map_sirenhet
98.9549
99.3230
98.5895
60.8677
90375616903791293200
15.4679
cchapple-customINDELD1_5*het
99.5112
99.3229
99.7003
54.7900
8698159397146292149
51.0274
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.1004
99.3228
98.8789
34.2183
440344155
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.3228
99.3228
99.3228
34.5643
440344033
100.0000
jmaeng-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2695
99.3226
99.2164
76.1399
4794432747736377289
76.6578
ghariani-varprowlSNPtvmap_l100_m2_e1het
97.2241
99.3224
95.2126
76.7581
158301081583179698
12.3116
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.9167
99.3224
98.5143
47.0103
27851927854242
100.0000
gduggal-snapplatSNP*func_cds*
99.4703
99.3223
99.6187
31.7106
1802712318027695
7.2464
ltrigg-rtg2SNPtvmap_l150_m0_e0homalt
99.6224
99.3223
99.9242
72.7891
13199131910
0.0000
egarrison-hhgaSNPtvmap_l150_m0_e0homalt
99.6224
99.3223
99.9242
75.6143
13199131911
100.0000
gduggal-bwafbSNPtimap_sirenhet
99.0568
99.3219
98.7930
59.4400
6195942361963757131
17.3052
hfeng-pmm2SNPtvmap_l150_m2_e0*
99.1297
99.3219
98.9383
77.9235
11278771127612114
11.5702
jlack-gatkSNPtvmap_l100_m2_e0het
94.4020
99.3218
89.9466
81.2769
1567010715666175190
5.1399
ghariani-varprowlSNPtvmap_l100_m2_e0het
97.2146
99.3218
95.1950
76.6930
156701071567179198
12.3894
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5573
99.3217
99.7940
54.6839
25187172251855239
75.0000
jpowers-varprowlSNPtvmap_sirenhomalt
99.3790
99.3213
99.4367
59.4375
17123117171239772
74.2268
ckim-dragenSNP*map_l125_m2_e1homalt
99.5683
99.3212
99.8166
63.9224
17413119174183229
90.6250
dgrover-gatkSNP*map_l125_m2_e0het
99.1639
99.3212
99.0070
77.2838
291191992911329256
19.1781
hfeng-pmm3SNPtimap_l125_m1_e0het
99.4436
99.3211
99.5663
71.0299
1814212418138798
10.1266
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2667
99.3211
99.2123
71.8135
55593855424435
79.5455
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.4351
99.3209
97.5651
66.8707
1170811622929
100.0000
dgrover-gatkSNP*map_l125_m2_e0homalt
99.6075
99.3209
99.8958
66.5083
17257118172571813
72.2222
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2368
99.3209
97.1761
73.3746
1170811703434
100.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.1956
99.3209
97.0954
73.3937
1170811703535
100.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.7852
99.3209
96.2963
73.0778
1170811704545
100.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.6310
99.3209
99.9431
59.6415
175512175511
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.4868
99.3209
97.6667
72.1900
1170811722828
100.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.0835
99.3208
98.8474
56.8151
114067811406133125
93.9850
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.2940
99.3207
97.2884
75.8975
194461331944654230
5.5351
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.2940
99.3207
97.2884
75.8975
194461331944654230
5.5351
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.2302
99.3206
84.3587
81.4184
144729913726254573
2.8684
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.2302
99.3206
84.3587
81.4184
144729913726254573
2.8684
ltrigg-rtg2INDELI1_5**
99.5218
99.3203
99.7241
55.5467
1496391024148928412159
38.5922
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.5978
99.3202
99.8769
36.6057
730550730194
44.4444
bgallagher-sentieonSNPtimap_l150_m1_e0*
99.1792
99.3202
99.0387
75.5864
195781341957419036
18.9474
hfeng-pmm3SNPtvmap_l125_m2_e0het
99.3771
99.3201
99.4342
72.2814
103717110369595
8.4746