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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13901-13950 / 86044 show all
hfeng-pmm2SNPtimap_l100_m1_e0het
99.3403
99.3387
99.3419
67.8029
297441982973719716
8.1218
qzeng-customSNPti*homalt
99.6207
99.3383
99.9047
15.9860
7977255314792891756473
62.5661
bgallagher-sentieonSNPtvmap_l150_m2_e0het
98.6238
99.3381
97.9198
79.8967
720448720215320
13.0719
ltrigg-rtg1SNPtvsegduphet
98.5379
99.3380
97.7505
88.6829
52523552581211
0.8264
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6310
99.3377
99.9260
40.6323
405027405330
0.0000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4660
99.3376
99.5947
73.4410
35992436861512
80.0000
ghariani-varprowlSNPtimap_siren*
99.0024
99.3374
98.6698
59.6146
99690665996931344247
18.3780
ghariani-varprowlSNP*map_siren*
98.7774
99.3373
98.2237
61.6367
1452599691452632627430
16.3685
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.7180
99.3371
98.1066
65.6768
124388312280237222
93.6709
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4059
99.3368
99.4750
48.7096
1003567100435344
83.0189
rpoplin-dv42SNPtimap_l125_m2_e1homalt
99.5496
99.3367
99.7633
68.9111
1138276113822726
96.2963
rpoplin-dv42SNPtvmap_l100_m1_e0homalt
99.5567
99.3365
99.7779
62.4922
89836089832018
90.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.9473
99.3365
94.6703
50.0000
3144213144177175
98.8701
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9613
99.3365
98.5889
49.3810
31442131444543
95.5556
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0206
99.3362
98.7071
54.3318
37412537414945
91.8367
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0206
99.3362
98.7071
54.3318
37412537414945
91.8367
jli-customSNPtimap_l100_m2_e0*
99.4978
99.3362
99.6598
62.5143
486363254863416650
30.1205
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.6545
99.3358
99.9752
49.3288
403827403811
100.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.7313
99.3358
96.1778
82.5839
1346912334932
65.3061
astatham-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.8462
99.3358
96.4006
82.8203
1346912324629
63.0435
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
93.0016
99.3355
87.4269
52.3677
59845988685
98.8372
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0456
99.3353
98.7576
71.4856
37362537364745
95.7447
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0456
99.3353
98.7576
71.4856
37362537364745
95.7447
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0587
99.3353
98.7837
71.2941
37362537364645
97.8261
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0587
99.3353
98.7837
71.2941
37362537364645
97.8261
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.4553
99.3353
99.5755
60.7194
164411164274
57.1429
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.4854
99.3353
99.6359
61.3327
164411164263
50.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.3720
99.3348
99.4092
74.3463
13449134683
37.5000
hfeng-pmm3SNPtimap_l125_m2_e1het
99.4518
99.3346
99.5693
72.3168
1896012718956828
9.7561
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.0811
99.3345
98.8289
41.8039
18062121180592142
0.9346
raldana-dualsentieonSNPtvmap_l100_m2_e0het
99.1552
99.3345
98.9766
69.6214
15672105156681621
0.6173
jpowers-varprowlSNPti*het
99.4145
99.3343
99.4948
22.7953
1273353853412735116466293
4.5314
rpoplin-dv42INDEL**het
99.0459
99.3340
98.7595
59.2937
192840129319274924212250
92.9368
bgallagher-sentieonSNPtimap_l100_m0_e0*
99.2132
99.3340
99.0926
69.0197
216261452162319835
17.6768
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.5910
99.3338
99.8496
31.5262
7306497302113
27.2727
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6222
99.3336
99.9125
51.6616
25190169251132214
63.6364
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2829
99.3333
99.2326
76.5804
2980202974238
34.7826
hfeng-pmm1SNPtimap_sirenhet
99.5806
99.3331
99.8292
52.2251
619664166195710624
22.6415
dgrover-gatkSNPtimap_l125_m2_e1*
99.3781
99.3327
99.4236
73.9461
303652043036117642
23.8636
hfeng-pmm3SNPtimap_l125_m2_e0het
99.4510
99.3325
99.5698
72.2770
1875012618746818
9.8765
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5984
99.3324
99.8658
78.7628
148810148822
100.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6313
99.3324
99.9319
72.9366
148810146811
100.0000
jli-customSNP*map_l100_m2_e1*
99.4761
99.3323
99.6202
63.1271
742384997423528379
27.9152
jmaeng-gatkINDELD1_5**
99.3810
99.3322
99.4300
61.6387
145765980145820836338
40.4306
bgallagher-sentieonSNPtimap_l150_m2_e0*
99.1869
99.3321
99.0422
77.0287
203751372037119737
18.7817
hfeng-pmm3SNP*map_l125_m2_e1het
99.4275
99.3320
99.5233
72.3246
294421982943614113
9.2199
astatham-gatkSNPtimap_l100_m1_e0homalt
99.6258
99.3318
99.9216
57.0466
17840120178401413
92.8571
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.5412
99.3311
95.8146
61.4853
386126384616874
44.0476
rpoplin-dv42SNPtimap_l125_m2_e0homalt
99.5456
99.3309
99.7613
68.8663
1128276112822726
96.2963
gduggal-bwafbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.1407
99.3309
96.9788
67.1842
35182237352771099205
18.6533