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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 274 275 276 277 278 279 280 281 282 ... 1720 1721 » 13851-13900 / 86044 show all
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4376	99.3474	99.5280	38.8679	2740	18	2741	13	13	100.0000
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	*	99.3366	99.3470	99.3262	62.8885	47618	313	47611	323	19	5.8824
bgallagher-sentieon	SNP	*	map_l150_m2_e0	*	99.1151	99.3470	98.8842	77.1865	31644	208	31638	357	62	17.3669
bgallagher-sentieon	SNP	tv	map_l150_m2_e1	het	98.6417	99.3468	97.9466	79.9186	7300	48	7298	153	20	13.0719
mlin-fermikit	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.6638	99.3464	94.1222	70.3644	1216	8	1217	76	58	76.3158
jli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6313	99.3464	99.9178	60.7293	1216	8	1216	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6721	99.3464	100.0000	64.9669	1216	8	1216	0	0
cchapple-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6721	99.3464	100.0000	51.9682	1216	8	1208	0	0
dgrover-gatk	INDEL	*	*	*	99.4009	99.3458	99.4561	60.2776	342288	2254	342154	1871	1513	80.8658
egarrison-hhga	INDEL	D1_5	map_l100_m2_e0	homalt	99.2641	99.3453	99.1830	83.4862	607	4	607	5	4	80.0000
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e0	homalt	99.5898	99.3453	99.8355	80.5937	607	4	607	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	map_l100_m2_e0	homalt	99.5898	99.3453	99.8355	81.4067	607	4	607	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e0	homalt	99.5087	99.3453	99.6727	80.7741	607	4	609	2	2	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6482	99.3452	99.9530	35.3102	2124	14	2126	1	1	100.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6247	99.3452	99.9058	74.7803	2124	14	2122	2	1	50.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4887	99.3450	99.6329	63.1294	1365	9	1357	5	1	20.0000
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0722	99.3449	98.8011	64.3152	18047	119	18047	219	203	92.6941
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0722	99.3449	98.8011	64.3152	18047	119	18047	219	203	92.6941
jli-custom	INDEL	*	map_l125_m2_e0	homalt	99.2147	99.3447	99.0850	85.6014	758	5	758	7	4	57.1429
hfeng-pmm1	INDEL	*	map_l125_m2_e0	homalt	99.2796	99.3447	99.2147	85.2510	758	5	758	6	3	50.0000
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.0965	99.3446	93.0541	69.3007	1819	12	1822	136	0	0.0000
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4739	99.3445	99.6037	78.1364	6062	40	6032	24	14	58.3333
hfeng-pmm2	SNP	ti	map_l100_m2_e0	het	99.3370	99.3436	99.3305	69.0739	30421	201	30414	205	16	7.8049
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	97.3643	99.3432	95.4628	84.4394	605	4	526	25	10	40.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	97.0995	99.3432	94.9550	83.9270	605	4	527	28	20	71.4286
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	het	99.0798	99.3430	98.8180	74.4018	18146	120	18142	217	33	15.2074
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2885	99.3428	99.2341	89.3299	907	6	907	7	6	85.7143
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4808	99.3427	99.6193	80.0419	10730	71	10730	41	17	41.4634
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4816	99.3427	99.6209	60.8825	1058	7	1051	4	2	50.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5131	99.3427	99.6841	80.0486	10730	71	10730	34	12	35.2941
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6697	99.3415	100.0000	79.4752	1056	7	1056	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6226	99.3415	99.9054	80.1278	1056	7	1056	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.0250	99.3414	96.7430	63.3526	2715	18	2703	91	87	95.6044
jli-custom	INDEL	D1_5	map_siren	het	99.2764	99.3412	99.2116	78.6894	2262	15	2265	18	3	16.6667
jmaeng-gatk	INDEL	D1_5	map_siren	het	97.5886	99.3412	95.8968	85.7195	2262	15	2267	97	5	5.1546
jli-custom	SNP	ti	map_l100_m2_e1	*	99.5011	99.3412	99.6614	62.5257	49159	326	49157	167	50	29.9401
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	het	99.1544	99.3412	98.9684	69.6842	15833	105	15829	165	1	0.6061
ckim-gatk	SNP	*	segdup	*	98.8880	99.3409	98.4392	93.5811	27882	185	27876	442	14	3.1674
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.4386	99.3404	99.5370	69.4360	1506	10	1505	7	2	28.5714
astatham-gatk	SNP	ti	map_l100_m2_e1	homalt	99.6312	99.3403	99.9239	59.5512	18372	122	18372	14	13	92.8571
bgallagher-sentieon	SNP	tv	map_l150_m1_e0	*	98.9592	99.3402	98.5810	76.0604	10840	72	10838	156	25	16.0256
rpoplin-dv42	INDEL	D1_5	HG002complexvar	het	99.5249	99.3402	99.7103	55.5097	20628	137	20652	60	48	80.0000
ltrigg-rtg2	INDEL	I1_5	map_siren	homalt	99.5854	99.3399	99.8321	73.3974	1204	8	1189	2	1	50.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5588	99.3397	99.7789	76.7478	1354	9	1354	3	1	33.3333
bgallagher-sentieon	SNP	*	map_l150_m0_e0	homalt	99.5466	99.3397	99.7544	73.4273	4062	27	4062	10	8	80.0000
hfeng-pmm3	SNP	tv	map_l150_m2_e0	*	99.3876	99.3395	99.4357	75.5855	11280	75	11278	64	9	14.0625
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3723	99.3395	99.4052	88.3238	1504	10	1504	9	9	100.0000
astatham-gatk	SNP	ti	map_l100_m2_e0	homalt	99.6302	99.3391	99.9231	59.5727	18188	121	18188	14	13	92.8571
bgallagher-sentieon	INDEL	I1_5	segdup	*	99.2928	99.3390	99.2467	94.4424	1052	7	1054	8	2	25.0000
bgallagher-sentieon	SNP	ti	map_l150_m2_e1	*	99.1904	99.3389	99.0424	77.0978	20586	137	20582	199	37	18.5930

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