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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 273 274 275 276 277 278 279 280 281 ... 1720 1721 » 13801-13850 / 86044 show all
hfeng-pmm3	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	37.5254	308	2	308	0	0
hfeng-pmm2	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	39.9610	308	2	308	0	0
hfeng-pmm2	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	39.9610	308	2	308	0	0
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	97.3667	99.3548	95.4567	60.8139	16323	106	16325	777	514	66.1519
hfeng-pmm1	INDEL	D1_5	map_l100_m2_e1	homalt	99.5958	99.3548	99.8379	81.4993	616	4	616	1	1	100.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	89.3757	99.3548	81.2183	83.8259	154	1	160	37	34	91.8919
astatham-gatk	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	35.9667	308	2	308	0	0
astatham-gatk	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	35.9667	308	2	308	0	0
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6764	99.3548	100.0000	84.7525	154	1	154	0	0
bgallagher-sentieon	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	35.9667	308	2	308	0	0
bgallagher-sentieon	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	35.9667	308	2	308	0	0
jli-custom	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.8852	308	2	308	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3396	99.3548	99.3243	81.1705	154	1	147	1	0	0.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e1	homalt	99.5161	99.3548	99.6779	80.8747	616	4	619	2	2	100.0000
bgallagher-sentieon	SNP	*	map_l100_m0_e0	*	99.1340	99.3545	98.9146	69.7273	32629	212	32625	358	60	16.7598
bgallagher-sentieon	SNP	*	map_l150_m2_e1	*	99.1218	99.3542	98.8904	77.2353	32002	208	31996	359	62	17.2702
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2662	99.3541	99.1784	74.9780	1692	11	1690	14	3	21.4286
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4408	99.3541	99.5277	74.9889	1692	11	1686	8	2	25.0000
jli-custom	INDEL	*	map_l125_m2_e1	homalt	99.2258	99.3540	99.0979	85.7143	769	5	769	7	4	57.1429
hfeng-pmm1	INDEL	*	map_l125_m2_e1	homalt	99.2899	99.3540	99.2258	85.3746	769	5	769	6	3	50.0000
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	het	99.0858	99.3537	98.8194	75.6140	18754	122	18750	224	33	14.7321
jli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3229	99.3534	99.2923	66.7825	3227	21	3227	23	6	26.0870
gduggal-snapplat	SNP	ti	func_cds	het	99.3942	99.3532	99.4351	33.3621	8449	55	8449	48	4	8.3333
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4518	99.3532	99.5506	74.6799	768	5	886	4	2	50.0000
hfeng-pmm1	SNP	ti	map_l100_m1_e0	*	99.5693	99.3532	99.7862	62.2569	47621	310	47614	102	32	31.3725
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	*	99.3403	99.3525	99.3281	64.7470	48644	317	48637	329	19	5.7751
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.1500	99.3519	98.9488	79.8585	10731	70	10731	114	27	23.6842
gduggal-bwafb	SNP	ti	segdup	het	98.5285	99.3516	97.7189	92.3400	11952	78	11952	279	6	2.1505
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3837	99.3515	99.4160	78.0297	1532	10	1532	9	5	55.5556
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.2195	99.3511	97.1134	65.4886	1378	9	1413	42	2	4.7619
hfeng-pmm2	SNP	ti	map_l100_m2_e1	het	99.3427	99.3508	99.3346	69.0698	30759	201	30752	206	16	7.7670
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5662	99.3506	99.7826	28.3489	459	3	459	1	1	100.0000
ltrigg-rtg1	INDEL	*	map_l150_m1_e0	homalt	99.1349	99.3506	98.9201	86.9172	459	3	458	5	3	60.0000
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0291	99.3506	98.7097	63.5580	459	3	459	6	6	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5664	99.3506	99.7831	28.4161	459	3	460	1	1	100.0000
hfeng-pmm2	SNP	ti	map_l125_m0_e0	*	99.1282	99.3496	98.9077	76.2142	12679	83	12677	140	17	12.1429
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	92.3313	99.3492	86.2394	78.7375	916	6	915	146	129	88.3562
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5652	99.3492	99.7821	62.0766	1374	9	1374	3	0	0.0000
dgrover-gatk	SNP	tv	map_l125_m2_e0	het	99.0688	99.3488	98.7904	77.6779	10374	68	10372	127	22	17.3228
rpoplin-dv42	SNP	tv	map_l100_m2_e0	homalt	99.5649	99.3488	99.7820	64.8909	9154	60	9154	20	18	90.0000
ckim-vqsr	INDEL	D1_5	*	*	99.5124	99.3485	99.6767	61.5493	145789	956	145843	473	318	67.2304
hfeng-pmm2	INDEL	D1_5	map_siren	*	99.1528	99.3483	98.9580	80.2591	3506	23	3514	37	6	16.2162
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1128	99.3482	98.8786	72.9414	30940	203	30949	351	41	11.6809
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1128	99.3482	98.8786	72.9414	30940	203	30949	351	41	11.6809
jli-custom	SNP	ti	map_l150_m0_e0	homalt	99.6006	99.3481	99.8544	71.0140	2743	18	2743	4	4	100.0000
ltrigg-rtg1	SNP	ti	map_l150_m0_e0	homalt	99.5282	99.3481	99.7091	74.5205	2743	18	2742	8	8	100.0000
hfeng-pmm2	INDEL	*	map_l100_m1_e0	homalt	99.1863	99.3480	99.0252	81.8088	1219	8	1219	12	6	50.0000
hfeng-pmm1	INDEL	*	map_l100_m1_e0	homalt	99.1863	99.3480	99.0252	81.5332	1219	8	1219	12	5	41.6667
hfeng-pmm3	SNP	tv	map_l150_m2_e1	*	99.3954	99.3479	99.4429	75.5927	11427	75	11425	64	9	14.0625
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5824	99.3478	97.8288	50.3389	4722	31	4731	105	95	90.4762

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