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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 272 273 274 275 276 277 278 279 280 ... 1720 1721 » 13751-13800 / 86044 show all
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6795	99.3610	100.0000	35.3430	311	2	311	0	0
ckim-dragen	SNP	ti	map_l100_m2_e0	homalt	99.6194	99.3610	99.8792	57.3994	18192	117	18197	22	20	90.9091
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5230	99.3610	99.6855	53.7118	311	2	317	1	1	100.0000
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	97.9537	99.3610	96.5858	46.1375	7308	47	7327	259	42	16.2162
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	het	99.0933	99.3608	98.8273	75.6520	18965	122	18961	225	33	14.6667
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6041	99.3604	99.8489	69.0699	2641	17	2643	4	2	50.0000
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5100	99.3604	99.6600	70.5987	2641	17	2638	9	2	22.2222
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4664	99.3603	99.5726	85.2133	466	3	466	2	2	100.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0381	99.3603	98.7179	86.0756	466	3	462	6	5	83.3333
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5726	99.3603	99.7859	85.7055	466	3	466	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5289	99.3598	99.6985	56.1737	27780	179	27779	84	9	10.7143
raldana-dualsentieon	INDEL	*	map_siren	homalt	99.3604	99.3597	99.3611	79.7735	2638	17	2644	17	11	64.7059
raldana-dualsentieon	SNP	tv	map_l250_m2_e0	homalt	99.4658	99.3597	99.5722	85.2640	931	6	931	4	2	50.0000
ltrigg-rtg2	SNP	tv	map_l250_m2_e0	homalt	99.6788	99.3597	100.0000	85.3155	931	6	931	0	0
gduggal-bwafb	SNP	tv	map_l100_m2_e0	homalt	99.6083	99.3597	99.8582	65.9435	9155	59	9155	13	7	53.8462
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	*	99.3433	99.3594	99.3272	64.7652	49168	317	49161	333	19	5.7057
hfeng-pmm2	SNP	tv	map_l100_m0_e0	*	99.1581	99.3594	98.9576	71.7097	11013	71	11012	116	15	12.9310
gduggal-snapfb	SNP	*	segdup	het	98.5769	99.3590	97.8069	92.1233	17206	111	17215	386	16	4.1451
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.2282	99.3586	97.1232	68.6872	3253	21	3241	96	93	96.8750
gduggal-bwafb	SNP	tv	map_l100_m1_e0	homalt	99.6065	99.3586	99.8555	63.7543	8985	58	8985	13	7	53.8462
jli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.1373	99.3577	98.9179	69.5704	2011	13	2011	22	5	22.7273
dgrover-gatk	SNP	ti	map_l125_m2_e0	homalt	99.6336	99.3573	99.9115	66.1532	11285	73	11285	10	8	80.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2822	99.3573	99.2072	83.9930	2628	17	2628	21	7	33.3333
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3478	99.3571	99.3386	42.1628	10663	69	10663	71	1	1.4085
hfeng-pmm1	SNP	*	map_siren	het	99.5907	99.3571	99.8255	53.5727	90406	585	90392	158	38	24.0506
ghariani-varprowl	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	96.7473	99.3571	94.2711	57.1736	10663	69	10696	650	69	10.6154
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.0173	99.3569	94.7853	69.0702	309	2	309	17	16	94.1176
ndellapenna-hhga	SNP	tv	segdup	het	99.3381	99.3569	99.3193	90.2972	5253	34	5253	36	2	5.5556
astatham-gatk	INDEL	I1_5	HG002complexvar	het	99.6251	99.3568	99.8949	58.0548	18072	117	18051	19	9	47.3684
bgallagher-sentieon	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.5086	99.3568	97.6748	72.1675	5561	36	5545	132	121	91.6667
hfeng-pmm1	SNP	ti	map_l100_m2_e0	*	99.5722	99.3566	99.7887	64.0145	48646	315	48639	103	32	31.0680
ckim-dragen	SNP	ti	map_l100_m2_e1	homalt	99.6178	99.3565	99.8804	57.3860	18375	119	18380	22	20	90.9091
gduggal-bwafb	INDEL	D1_5	*	homalt	98.9426	99.3562	98.5324	61.7935	48611	315	48609	724	697	96.2707
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.7184	99.3562	96.1338	51.2081	6636	43	6639	267	254	95.1311
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	95.6108	99.3560	92.1377	74.6935	2160	14	2168	185	14	7.5676
ghariani-varprowl	INDEL	D1_5	*	het	92.9952	99.3560	87.3999	64.6847	87009	564	86983	12540	10606	84.5774
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.7673	99.3559	98.1857	45.9987	7404	48	7414	137	23	16.7883
jlack-gatk	INDEL	I1_5	HG002complexvar	*	99.5214	99.3556	99.6877	57.0609	33148	215	33197	104	72	69.2308
dgrover-gatk	SNP	tv	map_l125_m2_e1	het	99.0786	99.3556	98.8030	77.7194	10485	68	10483	127	22	17.3228
gduggal-bwafb	SNP	tv	map_l100_m2_e1	homalt	99.6066	99.3550	99.8595	65.9755	9242	60	9242	13	7	53.8462
rpoplin-dv42	SNP	tv	map_l100_m2_e1	homalt	99.5691	99.3550	99.7841	64.9074	9242	60	9242	20	18	90.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3548	99.3548	99.3548	83.2432	154	1	154	1	1	100.0000
dgrover-gatk	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.3636	308	2	308	0	0
dgrover-gatk	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.3636	308	2	308	0	0
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6764	99.3548	100.0000	82.9268	154	1	154	0	0
jli-custom	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.8852	308	2	308	0	0
hfeng-pmm1	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	39.1304	308	2	308	0	0
hfeng-pmm1	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	39.1304	308	2	308	0	0
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e1	homalt	99.5958	99.3548	99.8379	80.6765	616	4	616	1	1	100.0000
hfeng-pmm3	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	37.5254	308	2	308	0	0

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