PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13651-13700 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6872 | 99.3763 | 100.0000 | 45.8664 | 478 | 3 | 478 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | homalt | 99.1690 | 99.3763 | 98.9627 | 88.0782 | 478 | 3 | 477 | 5 | 3 | 60.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5833 | 99.3763 | 99.7912 | 54.8113 | 478 | 3 | 478 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5094 | 99.3762 | 99.6429 | 67.2531 | 6691 | 42 | 6696 | 24 | 19 | 79.1667 | |
| jmaeng-gatk | SNP | tv | segdup | het | 97.3848 | 99.3758 | 95.4719 | 95.8451 | 5254 | 33 | 5250 | 249 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | homalt | 99.2206 | 99.3755 | 99.0661 | 82.8094 | 1273 | 8 | 1273 | 12 | 5 | 41.6667 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e1 | homalt | 99.1819 | 99.3755 | 98.9891 | 83.0186 | 1273 | 8 | 1273 | 13 | 6 | 46.1538 | |
| dgrover-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.6414 | 99.3753 | 99.9090 | 63.5537 | 10976 | 69 | 10976 | 10 | 8 | 80.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3536 | 99.3753 | 99.3320 | 81.7241 | 6840 | 43 | 6840 | 46 | 15 | 32.6087 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.4234 | 99.3750 | 97.4898 | 76.6883 | 1431 | 9 | 1437 | 37 | 7 | 18.9189 | |
| ndellapenna-hhga | INDEL | * | segdup | homalt | 99.1684 | 99.3750 | 98.9627 | 93.3714 | 954 | 6 | 954 | 10 | 9 | 90.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5825 | 99.3750 | 99.7908 | 68.8193 | 1431 | 9 | 1431 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.6403 | 99.3747 | 97.9167 | 72.3397 | 5562 | 35 | 5546 | 118 | 106 | 89.8305 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6319 | 99.3746 | 99.8906 | 32.4559 | 7309 | 46 | 7305 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | * | 98.9952 | 99.3740 | 98.6193 | 77.4754 | 11430 | 72 | 11428 | 160 | 25 | 15.6250 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | het | 98.4883 | 99.3731 | 97.6190 | 91.2048 | 5231 | 33 | 5084 | 124 | 8 | 6.4516 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3991 | 99.3730 | 97.4441 | 42.0040 | 3962 | 25 | 3965 | 104 | 97 | 93.2692 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4448 | 99.3729 | 99.5169 | 82.8933 | 4120 | 26 | 4120 | 20 | 8 | 40.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2113 | 99.3725 | 99.0508 | 63.8916 | 18052 | 114 | 18052 | 173 | 163 | 94.2197 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2113 | 99.3725 | 99.0508 | 63.8916 | 18052 | 114 | 18052 | 173 | 163 | 94.2197 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6200 | 99.3718 | 99.8694 | 32.0414 | 4587 | 29 | 4588 | 6 | 2 | 33.3333 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.2309 | 99.3718 | 87.8049 | 80.7052 | 19456 | 123 | 18720 | 2600 | 87 | 3.3462 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.2309 | 99.3718 | 87.8049 | 80.7052 | 19456 | 123 | 18720 | 2600 | 87 | 3.3462 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3717 | 99.3717 | 99.3717 | 79.9201 | 949 | 6 | 949 | 6 | 5 | 83.3333 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | het | 99.3136 | 99.3717 | 99.2555 | 68.4046 | 45074 | 285 | 45063 | 338 | 28 | 8.2840 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.0134 | 99.3714 | 74.2808 | 72.6746 | 4268 | 27 | 4312 | 1493 | 22 | 1.4735 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4872 | 99.3714 | 99.6033 | 48.0102 | 4268 | 27 | 4268 | 17 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | * | 99.0596 | 99.3711 | 98.7500 | 26.2673 | 158 | 1 | 158 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | * | 99.3730 | 99.3711 | 99.3750 | 31.0345 | 158 | 1 | 159 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | homalt | 99.6288 | 99.3708 | 99.8881 | 54.6776 | 17847 | 113 | 17852 | 20 | 19 | 95.0000 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.9877 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 65.7132 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6272 | 99.3707 | 99.8850 | 65.1363 | 1737 | 11 | 1737 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6844 | 99.3707 | 100.0000 | 60.6925 | 1737 | 11 | 1737 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.7763 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.9526 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | * | het | 98.8252 | 99.3703 | 98.2861 | 64.1967 | 11519 | 73 | 11469 | 200 | 170 | 85.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3703 | 99.3703 | 99.3703 | 89.2862 | 789 | 5 | 789 | 5 | 5 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0580 | 99.3700 | 98.7479 | 70.2830 | 2997 | 19 | 2997 | 38 | 7 | 18.4211 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.6662 | 99.3697 | 99.9644 | 66.5145 | 16868 | 107 | 16868 | 6 | 6 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.6662 | 99.3697 | 99.9644 | 66.5145 | 16868 | 107 | 16868 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | het | 98.9928 | 99.3695 | 98.6190 | 74.6006 | 28213 | 179 | 28207 | 395 | 55 | 13.9241 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5867 | 99.3693 | 99.8051 | 53.1359 | 6145 | 39 | 6145 | 12 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | map_siren | * | 99.6246 | 99.3686 | 99.8818 | 55.8072 | 45640 | 290 | 45640 | 54 | 25 | 46.2963 | |
| gduggal-bwafb | SNP | tv | map_siren | * | 99.0828 | 99.3686 | 98.7986 | 61.3728 | 45640 | 290 | 45640 | 555 | 80 | 14.4144 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6562 | 99.3685 | 99.9455 | 58.6114 | 11014 | 70 | 11010 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0239 | 99.3681 | 98.6821 | 49.3000 | 3145 | 20 | 3145 | 42 | 42 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4856 | 99.3676 | 99.6038 | 88.3504 | 1257 | 8 | 1257 | 5 | 5 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4462 | 99.3676 | 99.5249 | 88.0409 | 1257 | 8 | 1257 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.2279 | 99.3671 | 97.1146 | 56.0984 | 2355 | 15 | 2356 | 70 | 66 | 94.2857 | |