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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 269 270 271 272 273 274 275 276 277 ... 1720 1721 » 13601-13650 / 86044 show all
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2219	99.3862	99.0582	74.4553	33032	204	33027	314	203	64.6497
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6580	99.3861	99.9314	49.5848	1457	9	1456	1	0	0.0000
ckim-dragen	INDEL	*	segdup	het	95.8400	99.3861	92.5383	95.9567	1457	9	1451	117	2	1.7094
hfeng-pmm2	SNP	*	map_l100_m2_e1	het	99.3202	99.3859	99.2545	69.6861	46610	288	46599	350	28	8.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	97.9067	99.3856	96.4712	41.4606	1941	12	1941	71	67	94.3662
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6756	99.3855	99.9675	53.7536	6146	38	6146	2	0	0.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6595	99.3855	99.9350	53.0212	6146	38	6146	4	0	0.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4741	99.3855	99.5628	54.8644	6146	38	6148	27	9	33.3333
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6118	99.3853	99.8394	49.0173	11802	73	11810	19	12	63.1579
astatham-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.9798	99.3852	96.6135	72.1575	485	3	485	17	16	94.1176
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.9798	99.3852	96.6135	70.8648	485	3	485	17	16	94.1176
dgrover-gatk	INDEL	D1_5	map_siren	het	99.2553	99.3852	99.1259	82.2139	2263	14	2268	20	1	5.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5483	99.3850	99.7121	48.3425	2424	15	2424	7	3	42.8571
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	96.3870	99.3850	93.5645	65.8553	2424	15	2428	167	12	7.1856
jmaeng-gatk	SNP	tv	*	*	99.5370	99.3842	99.6902	27.5023	963719	5971	963632	2995	80	2.6711
dgrover-gatk	INDEL	I1_5	*	*	99.5294	99.3841	99.6753	59.0782	149736	928	149786	488	385	78.8934
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6910	99.3840	100.0000	60.2178	484	3	475	0	0
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8203	99.3835	98.2634	72.4925	30951	192	30951	547	35	6.3985
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8203	99.3835	98.2634	72.4925	30951	192	30951	547	35	6.3985
qzeng-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0366	99.3834	98.6923	64.9734	55288	343	55243	732	105	14.3443
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6646	99.3826	99.9483	59.5457	3863	24	3863	2	2	100.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e0	het	99.0076	99.3826	98.6355	75.8378	29137	181	29131	403	55	13.6476
astatham-gatk	INDEL	D1_5	HG002complexvar	*	99.5714	99.3825	99.7611	58.5986	32513	202	32567	78	66	84.6154
hfeng-pmm3	SNP	*	map_l150_m1_e0	*	99.4475	99.3825	99.5125	74.0748	30420	189	30414	149	23	15.4362
ltrigg-rtg1	INDEL	*	*	homalt	99.6060	99.3824	99.8305	54.1259	124398	773	124268	211	185	87.6777
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4664	99.3822	99.5507	61.1367	4826	30	4874	22	10	45.4545
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5344	99.3802	99.6891	63.3219	962	6	962	3	3	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6891	99.3802	100.0000	59.1393	962	6	959	0	0
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	91.3695	99.3801	84.5540	81.4321	28534	178	27026	4937	134	2.7142
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	91.3695	99.3801	84.5540	81.4321	28534	178	27026	4937	134	2.7142
rpoplin-dv42	SNP	tv	HG002compoundhet	het	99.5284	99.3794	99.6779	54.5836	4644	29	4642	15	10	66.6667
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5105	99.3794	99.6419	52.1832	1121	7	1113	4	2	50.0000
hfeng-pmm2	SNP	*	map_l100_m2_e0	het	99.3150	99.3793	99.2508	69.6789	46111	288	46100	348	28	8.0460
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.2924	99.3785	95.2920	69.4798	1599	10	1599	79	4	5.0633
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	95.6666	99.3783	92.2222	67.1222	2238	14	2241	189	11	5.8201
jlack-gatk	SNP	ti	map_siren	*	98.3403	99.3782	97.3238	62.0115	99731	624	99716	2742	240	8.7527
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	99.1036	99.3780	98.8308	63.1331	2716	17	2705	32	28	87.5000
hfeng-pmm3	SNP	tv	map_l100_m0_e0	*	99.4268	99.3775	99.4762	69.0933	11015	69	11014	58	8	13.7931
egarrison-hhga	INDEL	I1_5	*	het	99.4365	99.3775	99.4956	58.7039	78549	492	78511	398	185	46.4824
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6595	99.3775	99.9431	60.9816	1756	11	1756	1	1	100.0000
bgallagher-sentieon	INDEL	*	HG002complexvar	*	99.4954	99.3774	99.6137	58.2041	76459	479	76328	296	257	86.8243
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4656	99.3773	99.5540	78.3693	6064	38	6027	27	7	25.9259
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8309	99.3772	98.2905	53.9062	6702	42	6727	117	6	5.1282
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3080	99.3771	99.2391	58.1058	17070	107	17085	131	66	50.3817
gduggal-snapfb	SNP	ti	segdup	het	98.8224	99.3766	98.2744	91.5559	11955	75	11960	210	13	6.1905
ltrigg-rtg2	SNP	ti	map_l125_m0_e0	homalt	99.6428	99.3765	99.9105	65.1370	4463	28	4463	4	4	100.0000
raldana-dualsentieon	SNP	ti	map_l125_m0_e0	homalt	99.6205	99.3765	99.8657	64.9902	4463	28	4463	6	5	83.3333
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.3763	99.3763	99.3763	54.9625	478	3	478	3	2	66.6667

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