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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13551-13600 / 86044 show all
astatham-gatkINDEL*map_l150_m0_e0homalt
98.4894
99.3902
97.6048
91.2703
163116343
75.0000
hfeng-pmm2INDEL*map_l150_m0_e0homalt
98.7879
99.3902
98.1928
89.9819
163116333
100.0000
hfeng-pmm3INDEL*map_l150_m0_e0homalt
98.4894
99.3902
97.6048
89.0921
163116343
75.0000
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.3930
99.3902
97.4155
59.5008
48934901311
84.6154
ckim-gatkINDEL*map_l150_m0_e0homalt
98.7879
99.3902
98.1928
91.6917
163116333
100.0000
ckim-dragenINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
97.1012
99.3902
94.9153
88.6973
163111265
83.3333
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
95.4462
99.3902
91.8033
88.0275
1631112108
80.0000
ckim-vqsrINDEL*map_l150_m0_e0homalt
99.0881
99.3902
98.7879
91.7376
163116322
100.0000
ltrigg-rtg1INDEL*map_l150_m0_e0homalt
99.0881
99.3902
98.7879
89.8148
163116322
100.0000
ltrigg-rtg1INDEL*map_l150_m2_e1homalt
99.1897
99.3902
98.9899
88.0435
489349053
60.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
97.9960
99.3902
96.6403
62.2670
48934891716
94.1176
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
94.6822
99.3902
90.4000
87.6847
16311131210
83.3333
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2750
99.3899
99.1604
41.1634
47242947244040
100.0000
rpoplin-dv42SNPtiHG002compoundhethet
99.5469
99.3898
99.7044
38.8720
94475894452822
78.5714
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.6940
99.3898
100.0000
34.8326
13038130400
raldana-dualsentieonSNP*map_l100_m1_e0*
99.3579
99.3895
99.3263
63.6563
719614427195048823
4.7131
bgallagher-sentieonSNP*map_l125_m2_e1het
99.0167
99.3893
98.6469
75.8815
294591812945340455
13.6139
gduggal-bwafbSNP*map_siren*
99.2387
99.3893
99.0885
58.6242
1453358931453391337225
16.8287
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.0821
99.3893
94.8796
55.1755
3743233743202199
98.5149
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.0821
99.3893
94.8796
55.1755
3743233743202199
98.5149
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1261
99.3893
98.8642
54.0422
37432337434342
97.6744
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1261
99.3893
98.8642
54.0422
37432337434342
97.6744
raldana-dualsentieonSNP*map_l125_m0_e0homalt
99.6192
99.3892
99.8503
65.6627
6671416671107
70.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2278
99.3890
99.0672
63.8278
1805511118055170157
92.3529
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2278
99.3890
99.0672
63.8278
1805511118055170157
92.3529
ltrigg-rtg1SNP*map_l150_m0_e0homalt
99.5834
99.3886
99.7790
75.2221
406425406399
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2174
99.3885
99.0469
69.9044
37382337413634
94.4444
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2174
99.3885
99.0469
69.9044
37382337413634
94.4444
eyeh-varpipeSNPtimap_l250_m1_e0*
98.9581
99.3885
98.5313
90.1600
4551284495676
8.9552
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9281
99.3885
98.4721
71.1857
37382337385856
96.5517
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9281
99.3885
98.4721
71.1857
37382337385856
96.5517
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0855
99.3885
98.7844
71.5296
37382337384644
95.6522
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0855
99.3885
98.7844
71.5296
37382337384644
95.6522
egarrison-hhgaINDELI1_5map_l125_m1_e0homalt
99.0854
99.3884
98.7842
84.1140
325232541
25.0000
eyeh-varpipeSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8170
99.3884
96.2946
56.5927
27788171270791042134
12.8599
jmaeng-gatkINDELI1_5map_l125_m1_e0homalt
99.2366
99.3884
99.0854
83.4677
325232532
66.6667
ltrigg-rtg1INDELI1_5map_l125_m1_e0homalt
99.2310
99.3884
99.0741
82.8662
325232131
33.3333
jlack-gatkINDELI1_5map_l125_m1_e0homalt
99.0854
99.3884
98.7842
83.4006
325232542
50.0000
rpoplin-dv42INDELI1_5map_l125_m1_e0homalt
99.3884
99.3884
99.3884
83.3672
325232521
50.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6524
99.3882
99.9179
31.7465
731045730661
16.6667
hfeng-pmm2SNP*map_l150_m2_e0*
99.2475
99.3878
99.1076
77.7218
316571953165128534
11.9298
jmaeng-gatkINDEL*HG002complexvarhet
99.5676
99.3876
99.7482
58.0104
459292834556011573
63.4783
ckim-vqsrSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.6571
99.3874
99.9283
62.5798
697643697253
60.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.6287
99.3874
99.8711
62.1463
697643697590
0.0000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6187
99.3868
99.8516
38.0325
405225403862
33.3333
hfeng-pmm1SNP*map_l100_m1_e0*
99.5814
99.3868
99.7767
62.8958
719594447194816149
30.4348
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6557
99.3868
99.9261
40.5247
405225405530
0.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4334
99.3865
99.4804
79.7057
4212264212228
36.3636
bgallagher-sentieonSNPtvmap_l100_m0_e0*
98.9757
99.3865
98.5682
71.0162
11016681101516025
15.6250
rpoplin-dv42SNP*HG002compoundhethet
99.5408
99.3864
99.6957
45.1283
1409187140874332
74.4186