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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 267 268 269 270 271 272 273 274 275 ... 1720 1721 » 13501-13550 / 86044 show all
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6042	99.3980	99.8112	69.7820	2642	16	2643	5	3	60.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5855	99.3980	99.7736	69.6866	2642	16	2644	6	4	66.6667
hfeng-pmm1	SNP	*	map_l100_m2_e1	*	99.5878	99.3979	99.7783	64.6489	74287	450	74276	165	49	29.6970
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	87.1298	99.3978	77.5574	83.2455	9078	55	8484	2455	50	2.0367
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.1298	99.3978	77.5574	83.2455	9078	55	8484	2455	50	2.0367
bgallagher-sentieon	SNP	tv	map_l150_m0_e0	homalt	99.5475	99.3976	99.6979	74.9100	1320	8	1320	4	3	75.0000
jli-custom	SNP	tv	map_l150_m0_e0	homalt	99.5851	99.3976	99.7732	73.0220	1320	8	1320	3	3	100.0000
rpoplin-dv42	SNP	ti	map_siren	het	99.5664	99.3973	99.7362	53.8516	62006	376	61997	164	94	57.3171
raldana-dualsentieon	SNP	*	map_l100_m2_e0	*	99.3627	99.3970	99.3284	65.5143	73518	446	73507	497	23	4.6278
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4857	99.3958	99.5758	60.5358	1645	10	1643	7	4	57.1429
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4556	99.3958	99.5154	60.4361	1645	10	1643	8	5	62.5000
jli-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.8967	99.3952	98.4032	71.6308	986	6	986	16	2	12.5000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0767	99.3951	98.7603	83.0758	2629	16	2629	33	6	18.1818
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.5956	99.3947	99.7973	28.9459	2463	15	2462	5	1	20.0000
ghariani-varprowl	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	98.2105	99.3947	97.0542	49.5042	2463	15	2471	75	0	0.0000
hfeng-pmm2	SNP	*	map_l150_m2_e1	*	99.2528	99.3946	99.1113	77.7651	32015	195	32009	287	34	11.8467
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2677	99.3946	99.1411	57.1258	4269	26	4271	37	6	16.2162
ghariani-varprowl	SNP	*	map_siren	homalt	99.5027	99.3944	99.6112	54.3239	54822	334	54823	214	127	59.3458
raldana-dualsentieon	SNP	ti	map_siren	het	99.3661	99.3941	99.3382	55.1273	62004	378	61995	413	8	1.9371
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6831	99.3940	99.9739	63.4875	11482	70	11482	3	3	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6831	99.3940	99.9739	63.4875	11482	70	11482	3	3	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.2386	819	5	819	3	1	33.3333
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2727	99.3932	99.1525	71.5271	819	5	819	7	1	14.2857
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.6258	819	5	819	3	1	33.3333
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3932	99.3932	99.3932	71.3192	819	5	819	5	1	20.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.7777	99.3930	98.1700	65.9733	12445	76	12285	229	215	93.8865
hfeng-pmm1	SNP	*	map_l100_m2_e0	*	99.5855	99.3929	99.7787	64.6417	73515	449	73504	163	49	30.0613
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	homalt	83.5249	99.3921	72.0264	83.4186	327	2	327	127	126	99.2126
hfeng-pmm2	INDEL	I1_5	HG002compoundhet	homalt	80.1471	99.3921	67.1458	86.0378	327	2	327	160	159	99.3750
hfeng-pmm3	INDEL	I1_5	HG002compoundhet	homalt	83.8462	99.3921	72.5055	83.0068	327	2	327	124	123	99.1935
jlack-gatk	INDEL	I1_5	HG002compoundhet	homalt	60.9506	99.3921	43.9516	87.9475	327	2	327	417	414	99.2806
jmaeng-gatk	INDEL	I1_5	HG002compoundhet	homalt	73.9819	99.3921	58.9189	89.0727	327	2	327	228	227	99.5614
jlack-gatk	SNP	*	map_siren	*	98.0143	99.3920	96.6743	64.0744	145339	889	145316	4999	358	7.1614
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3078	99.3917	99.2240	48.4791	2941	18	2941	23	2	8.6957
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.5396	99.3917	97.7019	59.4515	2941	18	2976	70	0	0.0000
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	88.5028	99.3917	79.7641	72.5419	2941	18	2976	755	16	2.1192
ckim-dragen	INDEL	D1_5	HG002complexvar	*	99.5269	99.3917	99.6625	58.3864	32516	199	32478	110	86	78.1818
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5758	99.3915	99.7609	70.9351	5390	33	5423	13	4	30.7692
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5758	99.3915	99.7609	70.9351	5390	33	5423	13	4	30.7692
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5935	99.3915	99.7963	54.1550	490	3	490	1	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4924	99.3915	99.5935	55.2320	490	3	490	2	0	0.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5935	99.3915	99.7963	55.2823	490	3	490	1	0	0.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3915	99.3915	99.3915	54.5622	490	3	490	3	2	66.6667
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0959	99.3912	98.8024	75.4321	653	4	660	8	2	25.0000
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	92.9441	99.3912	87.2825	81.4778	653	4	652	95	78	82.1053
ghariani-varprowl	SNP	*	map_siren	het	98.3861	99.3911	97.4013	64.9618	90437	554	90440	2413	303	12.5570
egarrison-hhga	INDEL	I1_5	*	homalt	99.4873	99.3910	99.5837	52.1988	60060	368	60044	251	188	74.9004
bgallagher-sentieon	SNP	tv	map_l100_m0_e0	het	98.6394	99.3908	97.8993	74.3366	7178	44	7177	154	21	13.6364
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.4149	99.3902	95.5166	51.8310	489	3	490	23	15	65.2174
bgallagher-sentieon	INDEL	*	map_l150_m0_e0	homalt	98.4894	99.3902	97.6048	91.1359	163	1	163	4	3	75.0000

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