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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13401-13450 / 86044 show all
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7078
99.4172
100.0000
48.8609
853585300
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.4679
99.4172
99.5187
47.0701
853582741
25.0000
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.6495
99.4172
99.8828
51.6714
853585210
0.0000
ckim-dragenSNPtvmap_l150_m1_e0homalt
99.5559
99.4171
99.6950
66.7792
39232339231210
83.3333
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.9819
99.4169
98.5507
55.3109
341234053
60.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5620
99.4169
99.7076
57.3034
341234110
0.0000
jmaeng-gatkINDELI1_5map_l125_m2_e1homalt
99.2722
99.4169
99.1279
84.8990
341234132
66.6667
rpoplin-dv42INDELI1_5map_l125_m2_e1homalt
99.4169
99.4169
99.4169
84.8965
341234121
50.0000
raldana-dualsentieonINDEL*HG002compoundhethomalt
57.9932
99.4169
40.9364
81.2893
6824682984980
99.5935
ndellapenna-hhgaINDELI1_5map_l125_m2_e1homalt
99.2722
99.4169
99.1279
85.2297
341234131
33.3333
hfeng-pmm3INDEL*HG002compoundhethomalt
74.6579
99.4169
59.7721
77.4506
6824682459454
98.9107
hfeng-pmm2INDEL*HG002compoundhethomalt
70.6370
99.4169
54.7791
80.4614
6824682563558
99.1119
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5131
99.4163
99.6101
78.2596
15339153365
83.3333
ltrigg-rtg1SNPtvmap_l250_m1_e0homalt
99.6487
99.4159
99.8826
86.0259
851585111
100.0000
ltrigg-rtg2SNPtvmap_l250_m1_e0homalt
99.7071
99.4159
100.0000
83.9646
851585100
raldana-dualsentieonSNPtvmap_l250_m1_e0homalt
99.4740
99.4159
99.5322
84.0366
851585142
50.0000
bgallagher-sentieonINDELD1_5map_l250_m1_e0*
97.4212
99.4152
95.5056
95.3670
170117081
12.5000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
95.6084
99.4152
92.0824
70.5431
8505849734
5.4795
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.9927
99.4152
94.6855
62.3980
8505873491
2.0408
hfeng-pmm2INDELD1_5map_l250_m1_e0*
96.8661
99.4152
94.4444
95.1987
1701170101
10.0000
raldana-dualsentieonSNPtvmap_l125_m0_e0homalt
99.6165
99.4147
99.8192
66.9456
220813220842
50.0000
egarrison-hhgaSNPtvmap_l125_m0_e0homalt
99.6615
99.4147
99.9095
69.6595
220813220822
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
97.9553
99.4146
96.5382
63.5394
27171627059791
93.8144
jpowers-varprowlSNP*map_sirenhomalt
99.5443
99.4144
99.6746
55.8957
5483332354834179129
72.0670
ltrigg-rtg2SNPtvsegduphet
98.5667
99.4137
97.7340
87.6779
52563152621222
1.6393
ndellapenna-hhgaINDELI1_5map_l125_m2_e0homalt
99.2679
99.4135
99.1228
84.9406
339233931
33.3333
rpoplin-dv42INDELI1_5map_l125_m2_e0homalt
99.4135
99.4135
99.4135
84.6119
339233921
50.0000
jmaeng-gatkINDELI1_5map_l125_m2_e0homalt
99.2679
99.4135
99.1228
84.7048
339233932
66.6667
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6471
99.4131
99.8821
84.7756
847584711
100.0000
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
84.3287
99.4131
73.2189
85.2401
8475853312168
53.8462
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2083
99.4128
99.0047
74.3003
1693101691175
29.4118
ckim-dragenSNPtvmap_sirenhet
98.4766
99.4128
97.5580
65.5354
284411682844471252
7.3034
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.2958
99.4125
99.1794
88.4605
846584676
85.7143
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.2958
99.4125
99.1794
88.4605
846584676
85.7143
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6416
99.4125
99.8717
75.1815
389223389255
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.6014
99.4125
97.8035
88.8214
8465846198
42.1053
hfeng-pmm3SNP*map_l100_m0_e0*
99.4850
99.4123
99.5578
68.0774
326481933264414521
14.4828
jli-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2976
99.4123
99.1832
67.8581
4736284736398
20.5128
ckim-dragenSNP*map_l100_m2_e0homalt
99.6377
99.4114
99.8650
58.3933
27361162273663733
89.1892
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6680
99.4113
99.9261
41.1569
405324405630
0.0000
ckim-dragenINDELD1_5**
99.4199
99.4105
99.4294
60.9956
145880865145840837396
47.3118
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4691
99.4104
99.5279
48.5945
2529152530121
8.3333
ckim-dragenSNP*map_l100_m2_e1homalt
99.6376
99.4100
99.8663
58.3837
27632164276373733
89.1892
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6218
99.4099
99.8345
72.5123
539132543090
0.0000
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6218
99.4099
99.8345
72.5123
539132543090
0.0000
dgrover-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.0391
99.4096
96.7059
82.8744
1347812334228
66.6667
ckim-vqsrINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.1537
99.4096
96.9291
83.2983
1347812313930
76.9231
hfeng-pmm1SNPtvmap_sirenhet
99.6130
99.4093
99.8175
56.2607
28440169284355214
26.9231
rpoplin-dv42SNPtvmap_sirenhet
99.4388
99.4093
99.4683
57.2644
284401692843615265
42.7632
mlin-fermikitSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6888
99.4087
97.9793
56.5956
6052366061125121
96.8000