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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 263 264 265 266 267 268 269 270 271 ... 1720 1721 » 13301-13350 / 86044 show all
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7001	99.4290	99.9726	32.1925	7313	42	7309	2	1	50.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6457	99.4290	99.8635	32.0123	7313	42	7315	10	4	40.0000
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	93.4194	99.4286	88.0952	73.9938	522	3	518	70	10	14.2857
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.5235	99.4286	99.6187	61.7293	1044	6	1045	4	4	100.0000
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	92.7176	99.4286	86.8552	76.5326	522	3	522	79	2	2.5317
hfeng-pmm3	SNP	ti	map_l100_m2_e0	het	99.5618	99.4285	99.6954	65.7218	30447	175	30440	93	9	9.6774
jmaeng-gatk	SNP	*	segdup	het	97.9514	99.4283	96.5177	95.0045	17218	99	17212	621	2	0.3221
jli-custom	INDEL	I1_5	HG002complexvar	het	99.6665	99.4282	99.9059	56.5291	18085	104	18053	17	9	52.9412
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2708	99.4280	99.1141	69.5332	19467	112	19467	174	16	9.1954
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2708	99.4280	99.1141	69.5332	19467	112	19467	174	16	9.1954
ndellapenna-hhga	SNP	tv	map_l100_m0_e0	homalt	99.6482	99.4280	99.8694	61.5639	3824	22	3824	5	3	60.0000
cchapple-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6843	99.4279	99.9421	53.0723	1738	10	1725	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6176	99.4275	99.8084	67.3342	521	3	521	1	1	100.0000
qzeng-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3290	99.4275	99.2308	69.0660	521	3	516	4	4	100.0000
astatham-gatk	INDEL	I1_5	HG002complexvar	*	99.6397	99.4275	99.8527	57.1222	33172	191	33219	49	39	79.5918
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4066	99.4274	99.3858	50.7439	11807	68	11812	73	23	31.5068
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	*	99.3257	99.4273	99.2243	71.0550	29167	168	29163	228	42	18.4211
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6854	99.4272	99.9450	44.5461	3645	21	3633	2	2	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5630	99.4272	99.6991	49.6904	3645	21	3645	11	11	100.0000
rpoplin-dv42	INDEL	D1_5	map_l125_m1_e0	homalt	99.0014	99.4269	98.5795	85.3088	347	2	347	5	5	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.3484	347	2	347	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.2494	347	2	347	2	2	100.0000
gduggal-snapplat	SNP	*	func_cds	homalt	99.7054	99.4269	99.9856	21.7587	6939	40	6939	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4261	99.4269	99.4253	83.1477	347	2	346	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m1_e0	homalt	99.5696	99.4269	99.7126	82.3350	347	2	347	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	83.7068	347	2	347	2	2	100.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6875	99.4266	99.9499	46.9556	3988	23	3988	2	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6626	99.4266	99.8998	45.8345	3988	23	3988	4	0	0.0000
rpoplin-dv42	INDEL	*	HG002complexvar	homalt	99.6016	99.4265	99.7773	55.5190	26872	155	26879	60	53	88.3333
ndellapenna-hhga	SNP	ti	segdup	het	99.4554	99.4264	99.4843	88.9326	11961	69	11961	62	2	3.2258
ckim-gatk	INDEL	D1_5	*	*	99.4755	99.4262	99.5247	61.4945	145903	842	145958	697	326	46.7719
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5689	99.4260	99.7122	48.3103	2425	14	2425	7	3	42.8571
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6302	99.4260	99.8353	48.5599	2425	14	2425	4	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7122	99.4260	100.0000	47.8270	2425	14	2425	0	0
jlack-gatk	SNP	*	*	hetalt	99.0280	99.4259	98.6333	53.8866	866	5	866	12	11	91.6667
jlack-gatk	SNP	tv	*	hetalt	99.0280	99.4259	98.6333	53.8866	866	5	866	12	11	91.6667
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6165	99.4259	99.8079	54.6157	3637	21	3636	7	2	28.5714
hfeng-pmm3	SNP	ti	map_l100_m1_e0	het	99.5602	99.4256	99.6952	64.3351	29770	172	29763	91	9	9.8901
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4759	99.4255	99.5264	47.7277	2942	17	2942	14	0	0.0000
ciseli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.8177	99.4251	96.2614	56.7778	6053	35	6025	234	108	46.1538
hfeng-pmm2	SNP	ti	map_l150_m2_e0	*	99.3133	99.4247	99.2021	77.6100	20394	118	20390	164	20	12.1951
asubramanian-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.7949	99.4246	98.1731	74.1057	30584	177	31383	584	402	68.8356
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9815	99.4242	98.5428	38.7768	4662	27	4666	69	1	1.4493
ckim-dragen	SNP	tv	map_l125_m2_e1	homalt	99.5877	99.4238	99.7522	65.1046	6039	35	6039	15	13	86.6667
jli-custom	SNP	*	map_l100_m0_e0	homalt	99.6679	99.4234	99.9135	58.5496	11553	67	11553	10	10	100.0000
hfeng-pmm3	INDEL	I16_PLUS	*	homalt	98.1968	99.4234	97.0000	68.6397	1552	9	1552	48	45	93.7500
asubramanian-gatk	INDEL	I6_15	HG002complexvar	homalt	98.2899	99.4234	97.1820	55.6903	1207	7	1207	35	34	97.1429
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4951	99.4232	99.5671	63.4301	1379	8	1380	6	2	33.3333
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6106	99.4231	99.7987	35.5602	3964	23	3966	8	6	75.0000
ciseli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	96.7631	99.4231	94.2417	48.2590	3964	23	3977	243	84	34.5679

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