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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 262 263 264 265 266 267 268 269 270 ... 1720 1721 » 13251-13300 / 86044 show all
hfeng-pmm2	SNP	tv	map_l100_m1_e0	het	99.2617	99.4357	99.0884	69.5075	15330	87	15326	141	12	8.5106
jlack-gatk	SNP	ti	map_siren	het	97.5925	99.4357	95.8164	66.8895	62030	352	62021	2708	216	7.9764
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6231	99.4357	99.8113	69.4243	2643	15	2645	5	2	40.0000
gduggal-snapfb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	96.6878	99.4355	94.0878	74.6352	10040	57	10026	630	84	13.3333
jli-custom	INDEL	*	map_siren	homalt	99.3607	99.4350	99.2865	79.8135	2640	15	2644	19	11	57.8947
hfeng-pmm2	INDEL	*	map_siren	homalt	99.3610	99.4350	99.2871	79.4763	2640	15	2646	19	12	63.1579
dgrover-gatk	INDEL	*	map_siren	homalt	99.3423	99.4350	99.2498	81.7385	2640	15	2646	20	11	55.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6764	99.4350	99.9189	28.6252	2464	14	2464	2	0	0.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6360	99.4350	99.8379	27.9708	2464	14	2463	4	0	0.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e0	homalt	99.3415	99.4350	99.2481	82.1297	528	3	528	4	2	50.0000
bgallagher-sentieon	SNP	tv	map_l125_m2_e0	het	98.8667	99.4350	98.3049	76.2296	10383	59	10381	179	22	12.2905
ltrigg-rtg1	INDEL	I1_5	map_l100_m2_e0	homalt	99.3401	99.4350	99.2453	81.4685	528	3	526	4	2	50.0000
jli-custom	SNP	ti	map_l100_m0_e0	homalt	99.6776	99.4340	99.9224	57.9039	7730	44	7730	6	6	100.0000
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.1761	99.4340	93.1248	68.3364	6149	35	6163	455	33	7.2528
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.6109	99.4340	97.8014	61.3838	3865	22	3870	87	83	95.4023
ltrigg-rtg2	INDEL	I1_5	segdup	*	99.1958	99.4334	98.9593	93.1346	1053	6	1046	11	3	27.2727
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3829	99.4334	99.3324	81.4625	6844	39	6844	46	14	30.4348
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5824	99.4333	99.7320	76.7777	2983	17	2977	8	4	50.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2974	99.4333	99.1620	40.9075	5088	29	5088	43	42	97.6744
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.5167	99.4332	99.6003	68.5145	4737	27	4735	19	7	36.8421
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7155	99.4327	100.0000	57.3263	3856	22	3856	0	0
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6125	99.4327	99.7930	57.8718	3856	22	3856	8	3	37.5000
egarrison-hhga	SNP	tv	segdup	het	99.4044	99.4326	99.3762	90.4305	5257	30	5257	33	2	6.0606
ghariani-varprowl	SNP	tv	segdup	het	95.9597	99.4326	92.7212	94.3028	5257	30	5261	413	3	0.7264
eyeh-varpipe	SNP	*	map_l250_m1_e0	*	98.8785	99.4323	98.3308	90.1611	7181	41	7010	119	12	10.0840
bgallagher-sentieon	SNP	*	map_l100_m0_e0	homalt	99.6507	99.4320	99.8703	60.0283	11554	66	11554	15	11	73.3333
hfeng-pmm2	SNP	tv	map_l125_m1_e0	*	99.2768	99.4318	99.1223	72.3649	15925	91	15923	141	16	11.3475
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	*	99.3281	99.4316	99.2249	72.6504	30086	172	30082	235	42	17.8723
ltrigg-rtg2	SNP	*	map_l250_m1_e0	homalt	99.6541	99.4316	99.8777	84.3152	2449	14	2449	3	3	100.0000
hfeng-pmm3	SNP	ti	map_l100_m2_e1	het	99.5633	99.4315	99.6955	65.7255	30784	176	30777	94	9	9.5745
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1157	99.4315	96.8342	51.8964	11368	65	11348	371	9	2.4259
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4660	99.4311	99.5010	59.2336	19749	113	19742	99	60	60.6061
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7147	99.4310	100.0000	46.1064	699	4	699	0	0
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.0787	99.4310	98.7288	45.5803	699	4	699	9	9	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.4310	99.4310	99.4310	47.4196	699	4	699	4	3	75.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6436	99.4310	99.8571	47.4080	699	4	699	1	1	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.1035	99.4307	94.8827	83.0011	524	3	445	24	24	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.6882	99.4307	94.0928	82.7133	524	3	446	28	28	100.0000
bgallagher-sentieon	INDEL	D6_15	*	het	98.7535	99.4306	98.0855	62.6961	11526	66	11476	224	188	83.9286
hfeng-pmm2	SNP	ti	map_l150_m2_e1	*	99.3155	99.4306	99.2007	77.6747	20605	118	20601	166	20	12.0482
hfeng-pmm3	SNP	ti	map_l100_m0_e0	*	99.5150	99.4304	99.5997	67.5390	21647	124	21644	87	13	14.9425
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	97.7920	99.4303	96.2068	45.3054	10298	59	10906	430	320	74.4186
cchapple-custom	INDEL	*	HG002complexvar	homalt	99.4073	99.4302	99.3845	51.9433	26873	154	26641	165	156	94.5455
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7071	99.4301	99.9857	60.0126	6979	40	6976	1	0	0.0000
ltrigg-rtg2	INDEL	D1_5	*	homalt	99.7038	99.4298	99.9794	54.3049	48647	279	48525	10	9	90.0000
bgallagher-sentieon	INDEL	*	map_l100_m1_e0	homalt	99.1870	99.4295	98.9457	83.6667	1220	7	1220	13	6	46.1538
astatham-gatk	INDEL	*	map_l100_m1_e0	homalt	99.3081	99.4295	99.1870	83.8625	1220	7	1220	10	6	60.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.8127	99.4294	98.2036	48.6526	2788	16	2788	51	50	98.0392
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6271	99.4292	99.8258	72.6049	21774	125	21771	38	37	97.3684
hfeng-pmm2	INDEL	D1_5	map_siren	het	98.9959	99.4291	98.5665	80.1620	2264	13	2269	33	2	6.0606

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