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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 260 261 262 263 264 265 266 267 268 ... 1720 1721 » 13151-13200 / 86044 show all
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	84.6219	362	2	362	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e0	homalt	99.5873	99.4505	99.7245	83.3867	362	2	362	1	1	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6839	99.4502	99.9188	54.8820	6150	34	6150	5	0	0.0000
asubramanian-gatk	SNP	ti	func_cds	homalt	99.7244	99.4502	100.0000	20.1522	5246	29	5246	0	0
bgallagher-sentieon	SNP	*	map_l125_m2_e0	*	99.2735	99.4499	99.0978	72.9518	46466	257	46460	423	70	16.5485
hfeng-pmm3	SNP	*	map_l100_m2_e1	het	99.5538	99.4499	99.6580	66.2190	46640	258	46629	160	14	8.7500
ltrigg-rtg2	INDEL	I1_5	*	het	99.5106	99.4497	99.5716	56.0879	78606	435	77868	335	92	27.4627
bgallagher-sentieon	INDEL	D1_5	*	*	99.5437	99.4494	99.6383	60.2111	145937	808	145993	530	397	74.9057
gduggal-snapfb	SNP	tv	segdup	*	98.5144	99.4491	97.5971	92.7173	8485	47	8489	209	12	5.7416
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3679	99.4491	99.2868	52.6423	6679	37	6682	48	39	81.2500
gduggal-bwafb	SNP	tv	map_siren	homalt	99.6686	99.4490	99.8893	56.7363	17145	95	17145	19	11	57.8947
ciseli-custom	SNP	ti	func_cds	*	98.7839	99.4488	98.1278	24.0438	13711	76	13680	261	31	11.8774
hfeng-pmm2	SNP	tv	map_l100_m2_e0	het	99.2723	99.4486	99.0966	70.7844	15690	87	15686	143	12	8.3916
eyeh-varpipe	SNP	ti	map_l250_m2_e1	*	99.0209	99.4484	98.5971	90.5779	5048	28	4990	71	6	8.4507
hfeng-pmm2	SNP	tv	map_l125_m2_e0	*	99.2975	99.4481	99.1474	73.9287	16398	91	16396	141	16	11.3475
ltrigg-rtg2	SNP	*	map_l250_m2_e1	homalt	99.6681	99.4481	99.8891	85.6712	2703	15	2703	3	3	100.0000
dgrover-gatk	SNP	ti	map_l100_m2_e1	het	99.4091	99.4477	99.3705	70.9092	30789	171	30782	195	39	20.0000
dgrover-gatk	INDEL	*	HG002complexvar	*	99.5612	99.4476	99.6751	58.4475	76513	425	76380	249	210	84.3373
ltrigg-rtg2	INDEL	D1_5	*	het	99.5293	99.4473	99.6114	53.9225	87090	484	86889	339	71	20.9440
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	homalt	99.6648	99.4469	99.8837	59.2653	7731	43	7731	9	7	77.7778
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	homalt	99.6905	99.4469	99.9354	59.4017	7731	43	7731	5	5	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
dgrover-gatk	SNP	tv	map_l100_m2_e0	homalt	99.6791	99.4465	99.9128	62.0923	9163	51	9163	8	5	62.5000
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5288	99.4462	99.6115	59.5139	19752	110	19745	77	49	63.6364
hfeng-pmm3	SNP	*	map_l100_m2_e0	het	99.5523	99.4461	99.6587	66.2016	46142	257	46131	158	14	8.8608
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5839	99.4460	99.7222	61.9048	359	2	359	1	1	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.5426	99.4455	97.6559	38.3006	4663	26	4666	112	1	0.8929
astatham-gatk	INDEL	*	map_l100_m2_e0	homalt	99.2874	99.4449	99.1304	84.8358	1254	7	1254	11	6	54.5455
bgallagher-sentieon	INDEL	*	map_l100_m2_e0	homalt	99.1696	99.4449	98.8959	84.6359	1254	7	1254	14	6	42.8571
asubramanian-gatk	INDEL	I1_5	func_cds	*	99.1720	99.4444	98.9011	44.5122	179	1	180	2	0	0.0000
rpoplin-dv42	INDEL	I1_5	func_cds	*	99.7214	99.4444	100.0000	35.4839	179	1	180	0	0
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e1	homalt	99.2606	99.4444	99.0775	82.2062	537	3	537	5	3	60.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.1682	99.4444	98.8935	86.9353	716	4	715	8	7	87.5000
mlin-fermikit	INDEL	I1_5	func_cds	*	99.1690	99.4444	98.8950	25.5144	179	1	179	2	1	50.0000
raldana-dualsentieon	INDEL	I1_5	func_cds	*	99.1720	99.4444	98.9011	32.5926	179	1	180	2	0	0.0000
qzeng-custom	INDEL	I1_5	func_cds	*	99.1720	99.4444	98.9011	34.7670	179	1	180	2	0	0.0000
hfeng-pmm2	INDEL	I1_5	func_cds	*	99.4460	99.4444	99.4475	34.6570	179	1	180	1	0	0.0000
hfeng-pmm3	INDEL	I1_5	func_cds	*	99.7214	99.4444	100.0000	33.8235	179	1	180	0	0
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7214	99.4444	100.0000	67.4027	1432	8	1432	0	0
hfeng-pmm1	INDEL	I1_5	func_cds	*	99.7214	99.4444	100.0000	35.2518	179	1	180	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7214	99.4444	100.0000	67.3953	1432	8	1432	0	0
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.8950	99.4444	98.3516	88.4426	716	4	716	12	3	25.0000
ltrigg-rtg1	INDEL	I1_5	map_l100_m2_e1	homalt	99.3504	99.4444	99.2565	81.6068	537	3	534	4	2	50.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3065	99.4444	99.1690	87.5731	716	4	716	6	6	100.0000
cchapple-custom	INDEL	I1_5	func_cds	*	99.4429	99.4444	99.4413	30.0781	179	1	178	1	0	0.0000
ckim-dragen	SNP	tv	map_l150_m2_e1	homalt	99.5761	99.4436	99.7089	69.3912	4111	23	4111	12	10	83.3333
ghariani-varprowl	SNP	ti	map_siren	homalt	99.5932	99.4435	99.7434	52.5183	37705	211	37706	97	56	57.7320
astatham-gatk	INDEL	D1_5	*	*	99.5682	99.4433	99.6934	60.4898	145928	817	145983	449	317	70.6013
asubramanian-gatk	INDEL	D1_5	segdup	homalt	99.5816	99.4429	99.7207	94.5193	357	2	357	1	1	100.0000

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