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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 259 260 261 262 263 264 265 266 267 ... 1720 1721 » 13101-13150 / 86044 show all
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6549	99.4561	99.8544	38.0748	2743	15	2743	4	4	100.0000
hfeng-pmm3	INDEL	D1_5	segdup	*	99.6820	99.4560	99.9091	93.9277	1097	6	1099	1	0	0.0000
hfeng-pmm1	INDEL	D1_5	segdup	*	99.4565	99.4560	99.4570	94.0511	1097	6	1099	6	0	0.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e1	*	99.2798	99.4555	99.1048	72.9953	46945	257	46939	424	70	16.5094
asubramanian-gatk	SNP	*	func_cds	homalt	99.7270	99.4555	100.0000	21.4908	6941	38	6941	0	0
egarrison-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5935	99.4554	99.7320	55.2895	20089	110	20097	54	39	72.2222
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8475	99.4543	98.2480	73.3285	729	4	729	13	13	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3494	99.4543	99.2447	49.9340	5650	31	5650	43	42	97.6744
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.9145	99.4543	98.3806	72.3198	729	4	729	12	12	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8475	99.4543	98.2480	73.3285	729	4	729	13	13	100.0000
hfeng-pmm2	SNP	tv	map_l100_m2_e1	het	99.2765	99.4541	99.0995	70.8119	15851	87	15847	144	12	8.3333
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5044	99.4538	99.5551	80.0137	10742	59	10742	48	17	35.4167
hfeng-pmm2	SNP	tv	map_l125_m2_e1	*	99.3046	99.4537	99.1559	73.9708	16566	91	16564	141	16	11.3475
hfeng-pmm3	INDEL	*	map_l125_m1_e0	homalt	99.3179	99.4536	99.1826	83.3974	728	4	728	6	3	50.0000
hfeng-pmm2	INDEL	*	map_l125_m1_e0	homalt	99.3179	99.4536	99.1826	84.3929	728	4	728	6	4	66.6667
bgallagher-sentieon	INDEL	*	map_l100_m2_e1	homalt	99.1826	99.4536	98.9130	84.6885	1274	7	1274	14	6	42.8571
bgallagher-sentieon	INDEL	*	map_l125_m1_e0	homalt	99.2502	99.4536	99.0476	85.8491	728	4	728	7	4	57.1429
astatham-gatk	INDEL	*	map_l100_m2_e1	homalt	99.2985	99.4536	99.1440	84.8877	1274	7	1274	11	6	54.5455
astatham-gatk	INDEL	*	map_l125_m1_e0	homalt	99.3179	99.4536	99.1826	86.0562	728	4	728	6	4	66.6667
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2702	99.4536	99.0876	76.1116	546	3	543	5	1	20.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0728	99.4536	98.6949	79.7288	546	3	605	8	1	12.5000
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.6122	99.4536	81.5431	79.4401	546	3	539	122	105	86.0656
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4263	99.4533	99.3994	51.5732	3638	20	3641	22	17	77.2727
hfeng-pmm1	SNP	tv	map_l100_m1_e0	*	99.6055	99.4531	99.7584	64.1006	24367	134	24363	59	17	28.8136
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6711	99.4530	99.8901	68.0141	909	5	909	1	0	0.0000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2358	99.4530	99.0196	68.7861	909	5	909	9	0	0.0000
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	93.8264	99.4530	88.8023	79.5703	909	5	912	115	1	0.8696
hfeng-pmm2	SNP	*	map_l125_m1_e0	*	99.3629	99.4529	99.2732	71.9477	45079	248	45073	330	39	11.8182
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8249	99.4525	98.2052	75.0047	9083	50	9083	166	10	6.0241
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8249	99.4525	98.2052	75.0047	9083	50	9083	166	10	6.0241
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2892	99.4524	99.1266	89.6532	908	5	908	8	7	87.5000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2229	99.4523	98.9946	49.9952	10350	57	10339	105	98	93.3333
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6334	99.4522	99.8153	34.5977	2723	15	2702	5	4	80.0000
ndellapenna-hhga	SNP	tv	HG002complexvar	het	99.7024	99.4520	99.9540	21.1664	149905	826	149923	69	30	43.4783
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6156	99.4518	99.7800	65.1991	907	5	907	2	1	50.0000
dgrover-gatk	SNP	tv	map_l100_m2_e1	homalt	99.6821	99.4517	99.9136	62.0828	9251	51	9251	8	5	62.5000
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.4739	99.4515	93.6694	63.2423	3989	22	3995	270	19	7.0370
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2813	99.4514	97.1385	53.8661	11421	63	11406	336	321	95.5357
jmaeng-gatk	SNP	ti	segdup	het	98.2022	99.4514	96.9839	94.5092	11964	66	11962	372	2	0.5376
ghariani-varprowl	SNP	tv	map_siren	het	97.7279	99.4512	96.0633	68.6369	28452	157	28453	1166	112	9.6055
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5351	99.4510	99.6193	87.6224	2355	13	2355	9	9	100.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3458	99.4510	99.2408	86.4188	2355	13	2353	18	14	77.7778
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4720	99.4510	99.4930	87.3253	2355	13	2355	12	11	91.6667
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5715	99.4508	99.6924	63.7612	11047	61	11021	34	16	47.0588
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5579	99.4508	99.6651	63.3945	11047	61	11012	37	16	43.2432
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7245	99.4505	100.0000	77.8994	543	3	545	0	0
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.0108	362	2	362	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.1280	362	2	362	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4498	99.4505	99.4490	84.0999	362	2	361	2	2	100.0000
rpoplin-dv42	INDEL	D1_5	map_l125_m2_e0	homalt	99.0424	99.4505	98.6376	86.1143	362	2	362	5	5	100.0000

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