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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13051-13100 / 86044 show all
hfeng-pmm2SNPtimap_l125_m1_e0*
99.4105
99.4648
99.3563
71.7136
291781572917418923
12.1693
hfeng-pmm1SNPtvmap_l100_m2_e0*
99.6119
99.4647
99.7596
65.8235
24899134248956017
28.3333
ckim-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6238
99.4640
97.7977
72.6194
5567305551125111
88.8000
ckim-gatkSNPtvHG002complexvarhet
99.7094
99.4639
99.9560
22.1876
1499238081498456619
28.7879
bgallagher-sentieonSNPtvmap_l125_m1_e0*
99.1503
99.4630
98.8396
71.8727
15930861592818728
14.9733
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4119
99.4624
99.3614
80.8398
68463768464411
25.0000
bgallagher-sentieonINDELD1_5map_l125_m2_e1homalt
99.4624
99.4624
99.4624
86.0098
370237022
100.0000
astatham-gatkINDELD1_5map_l125_m2_e1homalt
99.4624
99.4624
99.4624
86.1090
370237022
100.0000
rpoplin-dv42INDELD1_5map_l125_m2_e1homalt
99.0629
99.4624
98.6667
86.1470
370237055
100.0000
hfeng-pmm2INDELD1_5map_l125_m2_e1homalt
99.4624
99.4624
99.4624
84.6217
370237022
100.0000
hfeng-pmm3INDELD1_5map_l125_m2_e1homalt
99.5962
99.4624
99.7305
83.3707
370237011
100.0000
ltrigg-rtg1INDELD1_5map_l125_m2_e1homalt
99.3310
99.4624
99.2000
83.9812
370237232
66.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6890
99.4621
99.9169
79.7698
240413240621
50.0000
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.0423
99.4621
90.9985
80.5588
2404132406238191
80.2521
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7097
99.4621
99.9584
72.8647
240413240411
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6683
99.4621
99.8754
72.2887
240413240433
100.0000
ndellapenna-hhgaSNPtimap_l150_m2_e0homalt
99.6907
99.4617
99.9209
72.2145
757541757566
100.0000
jli-customSNPtvmap_l150_m2_e0homalt
99.6809
99.4612
99.9016
70.2372
406122406144
100.0000
bgallagher-sentieonSNPtvmap_l150_m2_e0homalt
99.6442
99.4612
99.8279
71.1244
406122406175
71.4286
astatham-gatkINDELI1_5*het
99.5857
99.4610
99.7107
60.4880
7861542678596228141
61.8421
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.9858
99.4610
98.5152
56.4669
664336663510098
98.0000
jmaeng-gatkSNP***
99.6144
99.4608
99.7686
23.7289
30381471647230380017046253
3.5907
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6927
99.4604
99.9261
41.2641
405522405830
0.0000
ciseli-customSNP*func_cds*
97.9137
99.4601
96.4146
25.6110
18052981799066942
6.2780
ltrigg-rtg2SNPtvmap_l125_m0_e0homalt
99.7066
99.4597
99.9548
66.5911
220912220910
0.0000
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7163
99.4597
99.9741
59.5798
386621386611
100.0000
ltrigg-rtg1SNPtisegduphet
98.7337
99.4597
98.0182
87.1794
1196565119692420
0.0000
hfeng-pmm3SNPtvmap_l125_m0_e0homalt
99.4597
99.4597
99.4597
72.3171
2209122209124
33.3333
hfeng-pmm2INDELD1_5map_l250_m2_e1*
96.8421
99.4595
94.3590
95.5203
1841184111
9.0909
bgallagher-sentieonINDELD1_5map_l250_m2_e1*
97.6127
99.4595
95.8333
95.7037
184118481
12.5000
jlack-gatkSNP*map_sirenhet
97.0812
99.4593
94.8142
68.9379
90499492904854949324
6.5468
ndellapenna-hhgaSNP*map_l150_m1_e0homalt
99.6799
99.4589
99.9020
69.8014
1121261112121110
90.9091
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
97.9611
99.4586
96.5079
63.7151
69813869922533
1.1858
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.0858
99.4585
92.9344
71.8889
385721386729419
6.4626
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6255
99.4585
99.7930
57.9022
385721385780
0.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7285
99.4585
100.0000
57.4142
385721385700
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6744
99.4583
99.8915
29.8859
918592111
100.0000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6744
99.4583
99.8915
30.2044
918592111
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7283
99.4580
100.0000
77.2087
367235600
jpowers-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.4182
99.4576
99.3789
47.3459
62343462403916
41.0256
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4104
99.4573
99.3635
79.6751
4215234215278
29.6296
ckim-dragenINDEL*HG002complexvarhet
99.6184
99.4569
99.7805
57.4574
459612514545810050
50.0000
hfeng-pmm3SNPtvmap_l125_m1_e0*
99.5034
99.4568
99.5500
69.7161
1592987159277210
13.8889
jpowers-varprowlSNPtimap_sirenhomalt
99.6196
99.4567
99.7830
54.0684
37710206377118257
69.5122
hfeng-pmm2INDELD1_5map_l250_m2_e0*
96.8254
99.4565
94.3299
95.4299
1831183111
9.0909
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5016
99.4565
99.5467
86.5782
10986109854
80.0000
dgrover-gatkINDELD6_15*het
98.8856
99.4565
98.3212
62.9800
115296311479196167
85.2041
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5016
99.4565
99.5467
86.5782
10986109854
80.0000
bgallagher-sentieonINDELD1_5map_l250_m2_e0*
97.6000
99.4565
95.8115
95.6223
183118381
12.5000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.5462
99.4562
99.6364
61.3039
16469164463
50.0000