PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12951-13000 / 86044 show all
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2319
99.4770
98.9880
80.7127
68473668477012
17.1429
rpoplin-dv42SNP*map_l100_m2_e0homalt
99.6325
99.4768
99.7886
63.6376
27379144273805854
93.1034
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.5532
99.4766
99.6299
68.0748
3231173230125
41.6667
dgrover-gatkSNPtimap_l100_m2_e1*
99.5279
99.4766
99.5792
67.5880
492262594921920850
24.0385
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7041
99.4765
99.9327
57.5361
163438616341114
36.3636
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6329
99.4764
99.7899
79.2908
950595021
50.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7126
99.4764
99.9499
47.9937
399021399020
0.0000
dgrover-gatkSNPtimap_l100_m1_e0*
99.5344
99.4763
99.5926
66.0277
476802514767319549
25.1282
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6790
99.4763
99.8825
56.1108
28112148280643318
54.5455
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.9971
99.4760
96.5614
59.6546
132971376491
2.0408
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0969
99.4760
98.7206
57.2310
66443566368683
96.5116
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.0762
99.4760
94.7894
67.5394
132971328734
5.4795
astatham-gatkINDEL*map_l125_m2_e0homalt
99.2806
99.4758
99.0862
86.9395
759475974
57.1429
bgallagher-sentieonINDEL*map_l125_m2_e0homalt
99.1509
99.4758
98.8281
86.7266
759475994
44.4444
hfeng-pmm3INDEL*map_l125_m2_e0homalt
99.2806
99.4758
99.0862
84.5627
759475973
42.8571
hfeng-pmm2INDEL*map_l125_m2_e0homalt
99.2157
99.4758
98.9570
85.4238
759475984
50.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7048
99.4757
99.9349
66.5658
1688689168861111
100.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7048
99.4757
99.9349
66.5658
1688689168861111
100.0000
bgallagher-sentieonSNPtimap_l100_m1_e0het
99.2799
99.4757
99.0849
68.0556
297851572977827538
13.8182
dgrover-gatkSNP*map_l100_m2_e1het
99.3747
99.4755
99.2742
71.6392
466522464664134163
18.4751
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6765
99.4754
99.8784
28.4513
246513246430
0.0000
ckim-dragenSNPtvmap_siren*
98.9465
99.4753
98.4233
61.5086
456892414569473269
9.4262
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5343
99.4751
99.5935
60.5291
1004453100454139
95.1220
astatham-gatkINDELD1_5HG002complexvarhet
99.6863
99.4751
99.8985
56.1634
20656109206622112
57.1429
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.8467
99.4746
96.2712
66.6478
56835682222
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6111
99.4746
97.7625
67.1751
56835681313
100.0000
jli-customINDELD1_5**
99.6468
99.4746
99.8195
58.9401
145974771146018264201
76.1364
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5256
99.4746
97.5945
65.3571
56835681414
100.0000
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.1850
99.4746
96.9283
66.0880
56835681818
100.0000
hfeng-pmm2SNPtimap_l125_m2_e0*
99.4203
99.4745
99.3661
73.2412
300991593009519223
11.9792
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.1542
99.4744
98.8359
77.1224
908548908510710
9.3458
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.1542
99.4744
98.8359
77.1224
908548908510710
9.3458
ciseli-customSNPtvfunc_cds*
95.2555
99.4738
91.3804
30.2616
434823433640911
2.6895
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
94.2215
99.4737
89.4961
39.1577
132371474173173
100.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4721
99.4737
99.4705
36.2584
13237131577
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.1754
99.4737
98.8789
38.7923
1323713231513
86.6667
raldana-dualsentieonSNPtvmap_l100_m1_e0*
99.3984
99.4735
99.3234
65.0677
24372129243681665
3.0121
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6608
99.4733
99.8491
69.3074
264414264642
50.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6608
99.4733
99.8491
69.8452
264414264643
75.0000
dgrover-gatkSNPtimap_l100_m2_e0*
99.5249
99.4730
99.5767
67.5957
487032584869620750
24.1546
jlack-gatkINDELD1_5map_sirenhet
95.7195
99.4730
92.2389
84.5589
226512227019111
5.7592
hfeng-pmm3INDELD1_5map_sirenhet
99.3647
99.4730
99.2567
77.5211
2265122270172
11.7647
eyeh-varpipeSNPtvmap_l150_m0_e0homalt
99.5466
99.4729
99.6203
81.0066
13217131251
20.0000
ltrigg-rtg1SNPtvmap_l150_m0_e0homalt
99.6981
99.4729
99.9244
76.2016
13217132111
100.0000
hfeng-pmm3INDEL*map_sirenhomalt
99.4733
99.4727
99.4739
78.7290
2641142647149
64.2857
hfeng-pmm1INDEL*map_sirenhomalt
99.4357
99.4727
99.3987
79.2482
2641142645169
56.2500
hfeng-pmm3SNPtvmap_l125_m2_e0*
99.5176
99.4724
99.5629
71.4177
1640287164007210
13.8889
ltrigg-rtg1SNP*map_l250_m1_e0homalt
99.6340
99.4722
99.7963
86.3079
245013245055
100.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7222
99.4720
99.9738
61.6817
11491611144031
33.3333
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7222
99.4720
99.9738
61.6817
11491611144031
33.3333