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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 255 256 257 258 259 260 261 262 263 ... 1720 1721 » 12901-12950 / 86044 show all
ltrigg-rtg2	SNP	ti	HG002compoundhet	hetalt	99.7403	99.4819	100.0000	21.4966	576	3	577	0	0
rpoplin-dv42	SNP	tv	map_siren	*	99.5468	99.4818	99.6119	56.8797	45692	238	45686	178	89	50.0000
dgrover-gatk	SNP	tv	map_l100_m1_e0	*	99.4329	99.4817	99.3842	68.2243	24374	127	24370	151	29	19.2053
raldana-dualsentieon	SNP	ti	map_l150_m1_e0	homalt	99.6923	99.4814	99.9041	67.2252	7289	38	7289	7	6	85.7143
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5135	99.4812	99.5457	78.2406	1534	8	1534	7	5	71.4286
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4812	99.4812	99.4812	78.2296	1534	8	1534	8	5	62.5000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2803	99.4811	99.0803	50.1719	10353	54	10342	96	88	91.6667
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.4457	99.4809	99.4105	79.4316	4216	22	4216	25	7	28.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2668	99.4808	99.0537	68.1013	3257	17	3245	31	29	93.5484
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.5350	99.4806	99.5894	54.0098	3639	19	3638	15	5	33.3333
jli-custom	SNP	ti	map_siren	het	99.5420	99.4806	99.6035	52.5864	62058	324	62054	247	50	20.2429
hfeng-pmm3	SNP	tv	map_l100_m2_e0	het	99.5338	99.4803	99.5875	67.0941	15695	82	15691	65	5	7.6923
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5542	99.4802	99.6283	49.3638	6698	35	6700	25	14	56.0000
jli-custom	INDEL	I1_5	*	het	99.6300	99.4800	99.7804	58.4682	78630	411	78600	173	112	64.7399
eyeh-varpipe	SNP	*	map_l250_m2_e0	*	98.9405	99.4800	98.4068	90.5464	7844	41	7659	124	12	9.6774
raldana-dualsentieon	SNP	ti	map_l150_m2_e1	homalt	99.6939	99.4800	99.9086	69.7472	7653	40	7653	7	6	85.7143
hfeng-pmm2	SNP	ti	map_l125_m2_e1	*	99.4245	99.4799	99.3693	73.2743	30410	159	30406	193	23	11.9171
ckim-vqsr	INDEL	D1_5	HG002complexvar	het	99.6767	99.4799	99.8743	56.3731	20657	108	20661	26	12	46.1538
dgrover-gatk	SNP	*	map_l100_m2_e0	*	99.4963	99.4795	99.5130	68.3628	73579	385	73568	360	79	21.9444
egarrison-hhga	INDEL	*	segdup	homalt	99.4792	99.4792	99.4792	93.5414	955	5	955	5	5	100.0000
qzeng-custom	INDEL	*	segdup	homalt	98.3551	99.4792	97.2561	92.3549	955	5	957	27	15	55.5556
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0493	99.4792	98.6231	67.7222	573	3	573	8	8	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.4606	99.4792	95.5224	40.8824	191	1	192	9	7	77.7778
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6522	99.4792	99.8258	69.0232	573	3	573	1	1	100.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.7080	99.4792	97.9487	44.6023	191	1	191	4	3	75.0000
jlack-gatk	INDEL	*	segdup	homalt	99.3240	99.4792	99.1693	93.4858	955	5	955	8	8	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9637	99.4792	98.4536	42.7729	191	1	191	3	2	66.6667
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5625	99.4792	99.6460	61.1149	573	3	563	2	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.4490	99.4792	95.5000	46.5241	191	1	191	9	8	88.8889
ltrigg-rtg2	INDEL	*	segdup	homalt	99.5827	99.4792	99.6865	92.2340	955	5	954	3	3	100.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6954	99.4790	99.9128	62.0351	3437	18	3437	3	3	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0767	99.4790	98.6777	68.4621	19477	102	19477	261	12	4.5977
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0767	99.4790	98.6777	68.4621	19477	102	19477	261	12	4.5977
ckim-gatk	SNP	*	*	*	99.6466	99.4788	99.8150	23.5123	3038698	15921	3038552	5632	250	4.4389
ndellapenna-hhga	SNP	*	map_l150_m2_e0	homalt	99.6916	99.4786	99.9056	72.3853	11638	61	11638	11	10	90.9091
bgallagher-sentieon	SNP	tv	map_l125_m2_e0	*	99.1716	99.4784	98.8667	73.4826	16403	86	16401	188	28	14.8936
eyeh-varpipe	SNP	ti	map_l150_m0_e0	*	98.7920	99.4784	98.1149	82.5537	7820	41	7703	148	7	4.7297
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7240	99.4783	99.9709	35.3959	3432	18	3434	1	1	100.0000
rpoplin-dv42	SNP	*	map_l100_m2_e1	homalt	99.6343	99.4783	99.7907	63.6404	27651	145	27652	58	54	93.1034
dgrover-gatk	SNP	*	map_l100_m1_e0	*	99.4999	99.4779	99.5218	66.8041	72025	378	72014	346	78	22.5434
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6078	99.4778	99.7382	83.1048	381	2	381	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.7872	381	2	381	0	0
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	82.6739	381	2	381	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.0516	381	2	381	0	0
jmaeng-gatk	SNP	*	HG002complexvar	het	99.7155	99.4778	99.9544	19.1665	463066	2431	462938	211	65	30.8057
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.4564	381	2	381	0	0
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5570	99.4777	99.6364	55.6678	11237	59	11234	41	40	97.5610
hfeng-pmm3	SNP	tv	map_l125_m2_e1	*	99.5225	99.4777	99.5673	71.4702	16570	87	16568	72	10	13.8889
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	het	99.2634	99.4775	99.0503	69.3746	30462	160	30455	292	38	13.0137
jpowers-varprowl	SNP	tv	*	*	99.3067	99.4773	99.1367	27.6192	964620	5069	964862	8402	1363	16.2223

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