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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12651-12700 / 86044 show all
eyeh-varpipeSNPtimap_l150_m2_e1het
98.7627
99.5083
98.0281
80.5176
12951641267725511
4.3137
ghariani-varprowlSNPtvsegdup*
97.0800
99.5077
94.7680
93.4258
849042849546932
6.8230
hfeng-pmm3SNPtimap_l125_m2_e0*
99.5898
99.5076
99.6722
70.9814
30109149301059916
16.1616
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
97.1826
99.5074
94.9640
83.8841
60635282821
75.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
96.8262
99.5074
94.2857
83.6449
60635283223
71.8750
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
97.3574
99.5074
95.2984
84.1819
60635272622
84.6154
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
96.8208
99.5074
94.2755
84.0377
60635273222
68.7500
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.6339
99.5071
95.8298
51.0822
5653285653246245
99.5935
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3410
99.5071
99.1754
50.3830
56532856534747
100.0000
gduggal-snapplatSNPtifunc_cdshomalt
99.7435
99.5071
99.9810
20.2128
524926524911
100.0000
astatham-gatkINDELD16_PLUSHG002compoundhethet
88.8320
99.5062
80.2260
58.8850
40322847068
97.1429
bgallagher-sentieonSNPtimap_l150_m2_e1homalt
99.6940
99.5060
99.8826
70.5038
765538765597
77.7778
jli-customSNPtimap_l150_m2_e1homalt
99.7134
99.5060
99.9217
69.9097
765538765566
100.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7252
99.5058
99.9456
54.0983
14697731469884
50.0000
jlack-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4853
99.5058
99.4648
66.6987
48322448322614
53.8462
jlack-gatkINDELI1_5HG002complexvarhet
99.5954
99.5052
99.6857
57.8787
1809990180805728
49.1228
jmaeng-gatkINDELI1_5HG002complexvarhet
99.6695
99.5052
99.8344
58.2792
1809990180813014
46.6667
ltrigg-rtg1INDELI1_5map_sirenhomalt
99.5850
99.5050
99.6653
76.7645
12066119142
50.0000
ckim-gatkINDELI1_5map_sirenhomalt
99.5056
99.5050
99.5062
78.6204
12066120964
66.6667
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.6752
99.5050
97.8590
48.2393
18093901800939421
5.3300
raldana-dualsentieonINDELI1_5map_sirenhomalt
99.6286
99.5050
99.7525
77.1148
12066120932
66.6667
ckim-vqsrINDELI1_5map_sirenhomalt
99.5465
99.5050
99.5881
78.6343
12066120953
60.0000
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6677
99.5048
99.8311
60.3522
1004750100481714
82.3529
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7369
99.5048
99.9701
61.6836
10047501004733
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.1302
99.5045
98.7588
79.7621
4217214217538
15.0943
jmaeng-gatkSNPtiHG002complexvarhet
99.7293
99.5044
99.9553
17.6005
313206156031315614049
35.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5417
99.5043
99.5791
77.6913
6624336624289
32.1429
ckim-dragenSNP*map_siren*
98.9989
99.5042
98.4987
58.4236
1455037251455172218229
10.3246
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7471
99.5042
99.9911
53.7923
11240561120911
100.0000
eyeh-varpipeSNPtimap_l125_m0_e0het
98.5647
99.5038
97.6432
79.9389
82224180791958
4.1026
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6820
99.5032
99.8615
74.2124
360518360551
20.0000
eyeh-varpipeSNPtimap_l150_m2_e0het
98.7657
99.5031
98.0391
80.4407
12817641254925111
4.3825
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.4629
99.5028
99.4231
53.9823
16018155193
33.3333
eyeh-varpipeINDELI1_5map_l150_m2_e0homalt
99.0179
99.5025
98.5380
88.0795
200133755
100.0000
gduggal-bwafbINDELI1_5map_l150_m2_e0homalt
99.0099
99.5025
98.5222
89.2706
200120031
33.3333
ckim-gatkINDELI1_5map_l150_m2_e0homalt
99.0099
99.5025
98.5222
88.8462
200120032
66.6667
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6017
99.5025
99.7012
65.7688
10005100132
66.6667
dgrover-gatkINDELI1_5map_l150_m2_e0homalt
99.0099
99.5025
98.5222
88.5634
200120032
66.6667
ckim-vqsrINDELI1_5map_l150_m2_e0homalt
99.2556
99.5025
99.0099
88.8950
200120021
50.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5522
99.5025
99.6020
65.6057
10005100143
75.0000
rpoplin-dv42INDELI1_5map_l150_m2_e0homalt
99.2556
99.5025
99.0099
88.4966
200120021
50.0000
ndellapenna-hhgaINDELI1_5map_l150_m2_e0homalt
99.0099
99.5025
98.5222
88.8031
200120031
33.3333
ltrigg-rtg1SNPtimap_l250_m1_e0homalt
99.6262
99.5022
99.7505
86.3540
15998159944
100.0000
hfeng-pmm1SNPtimap_l250_m1_e0homalt
99.4712
99.5022
99.4403
86.8852
15998159992
22.2222
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.5902
99.5017
84.8442
51.7430
5993599107106
99.0654
astatham-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
93.6669
99.5017
88.4786
52.4912
59935997877
98.7179
ckim-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
93.6669
99.5017
88.4786
52.7565
59935997877
98.7179
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6636
99.5017
99.8260
39.5847
459323458983
37.5000
dgrover-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
93.5937
99.5017
88.3481
52.5210
59935997978
98.7342
ckim-vqsrINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
93.7402
99.5017
88.6095
52.7933
59935997776
98.7013