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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12601-12650 / 86044 show all
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1996
99.5127
98.8884
74.7272
14500711450016314
8.5890
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.9121
99.5122
94.4444
91.3008
20412041210
83.3333
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.9121
99.5122
94.4444
91.3008
20412041210
83.3333
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.1049
99.5122
91.0714
91.1567
20412042015
75.0000
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.1049
99.5122
91.0714
91.1567
20412042015
75.0000
raldana-dualsentieonSNP*map_l150_m1_e0homalt
99.7067
99.5121
99.9020
67.3803
112185511218118
72.7273
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
ckim-vqsrINDELI1_5*het
99.5998
99.5116
99.6881
61.9903
7865538678634246145
58.9431
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4006
99.5116
99.2899
63.6333
352461733523525221
8.3333
ckim-dragenSNPtvmap_l100_m2_e0homalt
99.6739
99.5116
99.8367
60.2338
91694591691513
86.6667
asubramanian-gatkINDEL*HG002complexvarhomalt
99.4823
99.5116
99.4530
57.3903
2689513226910148101
68.2432
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4266
99.5114
95.4273
42.4504
5092255092244244
100.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2980
99.5114
99.0854
41.3691
50922550924747
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.2901
99.5113
97.0984
68.6486
32581632469794
96.9072
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.4469
99.5112
99.3827
62.5253
3868193864249
37.5000
asubramanian-gatkSNPtvfunc_cdshet
99.4171
99.5107
99.3236
42.1899
2644132643180
0.0000
mlin-fermikitSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3026
99.5107
97.1234
41.8851
6712336719199180
90.4523
jlack-gatkSNPtvmap_sirenhet
95.9855
99.5106
92.7015
72.5215
28469140284642241108
4.8193
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7071
99.5105
99.9045
32.0412
731936732172
28.5714
ndellapenna-hhgaSNPtvmap_l150_m2_e0homalt
99.6933
99.5102
99.8771
72.6980
406320406354
80.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.7965
99.5102
98.0929
39.5838
1137756114192226
2.7027
jmaeng-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7543
99.5098
100.0000
59.5752
12186121800
raldana-dualsentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7543
99.5098
100.0000
58.1874
12186121800
rpoplin-dv42INDELI1_5map_l150_m2_e1homalt
99.2665
99.5098
99.0244
88.6364
203120321
50.0000
ndellapenna-hhgaINDELI1_5map_l150_m2_e1homalt
99.0244
99.5098
98.5437
88.9840
203120331
33.3333
ckim-vqsrINDELI1_5map_l150_m2_e1homalt
99.2665
99.5098
99.0244
88.9488
203120321
50.0000
dgrover-gatkINDELI1_5map_l150_m2_e1homalt
99.0244
99.5098
98.5437
88.6501
203120332
66.6667
eyeh-varpipeINDELI1_5map_l150_m2_e1homalt
99.0279
99.5098
98.5507
88.2373
203134055
100.0000
gduggal-bwafbINDELI1_5map_l150_m2_e1homalt
98.7835
99.5098
98.0676
89.3683
203120341
25.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7135
99.5098
99.9180
66.6027
12186121810
0.0000
ckim-gatkINDELI1_5map_l150_m2_e1homalt
99.0244
99.5098
98.5437
88.9009
203120332
66.6667
rpoplin-dv42SNP*map_siren*
99.6224
99.5097
99.7354
54.5067
145511717145497386225
58.2902
raldana-dualsentieonSNP*map_l150_m2_e1homalt
99.7077
99.5096
99.9066
69.9014
117695811769118
72.7273
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.1050
99.5095
94.8139
49.1046
46662346622553
1.1765
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.2513
99.5095
97.0246
43.7566
46662346631431
0.6993
cchapple-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6803
99.5094
99.8517
35.3111
405720403964
66.6667
hfeng-pmm3SNPtimap_l125_m2_e1*
99.5907
99.5093
99.6723
71.0190
304191503041510016
16.0000
asubramanian-gatkINDELI1_5HG002complexvarhomalt
99.6538
99.5092
99.7987
52.7938
1338266133892726
96.2963
bgallagher-sentieonINDELD1_5map_l100_m2_e0homalt
99.5905
99.5090
99.6721
83.7116
608360822
100.0000
astatham-gatkINDELD1_5map_l100_m2_e0homalt
99.5090
99.5090
99.5090
83.7888
608360832
66.6667
hfeng-pmm2INDELD1_5map_l100_m2_e0homalt
99.5905
99.5090
99.6721
81.7529
608360822
100.0000
eyeh-varpipeSNPtvmap_l250_m1_e0*
98.7000
99.5089
97.9042
90.2532
2634132616566
10.7143
jli-customSNPtimap_l150_m1_e0homalt
99.7128
99.5087
99.9178
67.3088
729136729166
100.0000
bgallagher-sentieonSNPtimap_l150_m1_e0homalt
99.6923
99.5087
99.8767
68.0791
729136729197
77.7778
gduggal-bwafbSNPtisegdup*
99.0195
99.5086
98.5352
91.2837
19441961944128916
5.5363
ckim-vqsrINDEL**het
99.5204
99.5086
99.5323
62.3713
193179954192796906561
61.9205
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.1298
99.5085
98.7541
58.9047
182291823231
4.3478
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
83.6454
99.5085
72.1445
74.1800
18229185771713
1.8131
bgallagher-sentieonSNP*map_l100_m1_e0het
99.2217
99.5084
98.9366
68.7750
451362234512548563
12.9897