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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 246 247 248 249 250 251 252 253 254 ... 1720 1721 » 12451-12500 / 86044 show all
egarrison-hhga	INDEL	*	func_cds	het	99.0698	99.5327	98.6111	41.4634	213	1	213	3	0	0.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7289	99.5326	99.9260	41.7636	4046	19	4052	3	3	100.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6434	99.5326	99.7544	48.4618	4046	19	4061	10	1	10.0000
ltrigg-rtg1	SNP	ti	map_l125_m0_e0	homalt	99.6656	99.5324	99.7991	68.6301	4470	21	4470	9	9	100.0000
dgrover-gatk	SNP	ti	map_l100_m1_e0	homalt	99.7294	99.5323	99.9273	57.4153	17876	84	17876	13	11	84.6154
dgrover-gatk	INDEL	D1_5	HG002complexvar	*	99.6498	99.5323	99.7675	58.6672	32562	153	32617	76	66	86.8421
rpoplin-dv42	SNP	ti	map_l100_m1_e0	homalt	99.6655	99.5323	99.7990	60.4404	17876	84	17877	36	34	94.4444
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.5322	99.5322	99.5322	58.8745	851	4	851	4	0	0.0000
ckim-dragen	SNP	ti	map_siren	het	98.6081	99.5319	97.7013	60.9808	62090	292	62097	1461	137	9.3771
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.2430	99.5309	96.9881	59.7341	11032	52	11045	343	3	0.8746
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7097	99.5308	99.8892	74.1552	3606	17	3606	4	1	25.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6683	99.5308	99.8063	75.9886	3606	17	3606	7	5	71.4286
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.7300	99.5308	97.9420	44.2389	4667	22	4664	98	0	0.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4371	99.5305	99.3440	66.8736	1060	5	1060	7	7	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.4131	99.5300	99.2966	88.5687	847	4	847	6	6	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.8113	6986	33	6983	1	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.9128	6986	33	6983	1	0	0.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5296	99.5296	99.5296	81.1592	1058	5	1058	5	2	40.0000
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.1213	99.5294	98.7165	50.0292	846	4	846	11	10	90.9091
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7054	99.5294	99.8819	48.3851	846	4	846	1	1	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3250	99.5294	99.1213	51.0494	17767	84	17824	158	11	6.9620
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4104	99.5294	99.2916	44.4954	846	4	841	6	6	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7642	99.5294	100.0000	48.4461	846	4	846	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7054	99.5294	99.8819	48.1640	846	4	846	1	1	100.0000
dgrover-gatk	SNP	tv	map_l100_m2_e1	het	99.3081	99.5294	99.0878	72.9526	15863	75	15859	146	24	16.4384
eyeh-varpipe	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.1889	99.5294	94.9560	60.6805	17767	84	17150	911	86	9.4402
ltrigg-rtg2	SNP	ti	map_l125_m1_e0	homalt	99.7369	99.5292	99.9454	62.9489	10993	52	10993	6	6	100.0000
jli-custom	SNP	tv	HG002compoundhet	het	99.4759	99.5292	99.4226	55.0428	4651	22	4649	27	10	37.0370
jpowers-varprowl	SNP	ti	func_cds	*	99.5285	99.5285	99.5285	26.5751	13722	65	13722	65	9	13.8462
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4893	99.5283	99.4503	51.6973	2532	12	2533	14	1	7.1429
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3289	99.5281	99.1304	78.8666	4218	20	4218	37	6	16.2162
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.2960	99.5274	99.0657	69.8134	45486	216	45486	429	30	6.9930
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.2960	99.5274	99.0657	69.8134	45486	216	45486	429	30	6.9930
dgrover-gatk	INDEL	D1_5	*	*	99.6144	99.5271	99.7018	60.8244	146051	694	146107	437	317	72.5400
ndellapenna-hhga	SNP	ti	HG002compoundhet	homalt	98.8916	99.5266	98.2646	31.2248	7359	35	7361	130	119	91.5385
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6133	99.5263	99.7004	48.1016	3992	19	3993	12	3	25.0000
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5884	99.5263	99.6506	48.9164	3992	19	3993	14	1	7.1429
ltrigg-rtg2	SNP	ti	segdup	het	98.8445	99.5262	98.1721	86.1250	11973	57	11977	223	1	0.4484
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	92.9799	99.5261	87.2417	71.6212	1680	8	1689	247	126	51.0121
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	93.5412	99.5261	88.2353	68.7254	210	1	210	28	27	96.4286
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.4478	99.5261	95.4545	52.1739	210	1	210	10	0	0.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5261	99.5261	99.5261	46.9849	210	1	210	1	0	0.0000
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7625	99.5261	100.0000	43.0894	210	1	210	0	0
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.7152	99.5261	86.7769	70.8785	210	1	210	32	32	100.0000
ghariani-varprowl	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	93.8322	99.5261	88.7546	70.2144	1680	8	1689	214	129	60.2804
ckim-gatk	SNP	*	HG002complexvar	het	99.7401	99.5255	99.9558	19.1024	463288	2209	463160	205	69	33.6585
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.5254	99.5254	99.5254	68.0722	9646	46	9646	46	24	52.1739
gduggal-bwafb	SNP	ti	map_siren	homalt	99.7291	99.5253	99.9338	52.9575	37736	180	37736	25	14	56.0000
dgrover-gatk	SNP	ti	map_l100_m2_e0	homalt	99.7264	99.5248	99.9287	59.9046	18222	87	18222	13	11	84.6154
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	75.9168	99.5247	61.3615	46.7806	5654	27	5868	3695	3649	98.7551

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