PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1201-1250 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 44.8276 | 19 | 0 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 9 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | func_cds | homalt | 89.6552 | 100.0000 | 81.2500 | 50.0000 | 12 | 0 | 13 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 100.0000 | 42.8571 | 97.1774 | 3 | 0 | 3 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 57.1429 | 100.0000 | 40.0000 | 97.7876 | 2 | 0 | 2 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 100.0000 | 50.0000 | 92.5926 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 91.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 81.7352 | 100.0000 | 69.1120 | 78.6831 | 155 | 0 | 179 | 80 | 5 | 6.2500 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.9858 | 100.0000 | 57.4627 | 71.8487 | 74 | 0 | 77 | 57 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | segdup | homalt | 94.9495 | 100.0000 | 90.3846 | 91.3765 | 50 | 0 | 47 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 48.4848 | 17 | 0 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 6 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.3812 | 100.0000 | 2.7650 | 59.0566 | 3 | 0 | 6 | 211 | 173 | 81.9905 | |
| qzeng-custom | INDEL | I16_PLUS | func_cds | het | 88.8889 | 100.0000 | 80.0000 | 61.5385 | 9 | 0 | 8 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | func_cds | homalt | 57.1429 | 100.0000 | 40.0000 | 73.6842 | 2 | 0 | 2 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.0820 | 100.0000 | 90.6250 | 75.3846 | 16 | 0 | 29 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 60.4938 | 22 | 0 | 96 | 96 | 85 | 88.5417 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.4717 | 100.0000 | 60.6061 | 66.3265 | 8 | 0 | 20 | 13 | 6 | 46.1538 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.2836 | 3 | 0 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5357 | 2 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.1290 | 1 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.4955 | 1 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.3415 | 1 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.6897 | 1 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 96.4072 | 1 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 95.7265 | 1 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | homalt | 87.8049 | 100.0000 | 78.2609 | 90.9091 | 19 | 0 | 18 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | * | 90.9091 | 100.0000 | 83.3333 | 53.8462 | 4 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | het | 85.7143 | 100.0000 | 75.0000 | 42.8571 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.6098 | 119 | 0 | 122 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 55.8140 | 22 | 0 | 19 | 0 | 0 | ||