PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12401-12450 / 86044 show all
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6848
99.5401
99.8300
56.5387
170987917030299
31.0345
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7449
99.5401
99.9505
54.6217
606028606033
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.8441
99.5400
98.1579
64.3471
2164102238422
4.7619
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.2343
99.5392
98.9313
39.6684
1944919442120
95.2381
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6923
99.5392
99.8459
28.7987
388818388861
16.6667
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4459
99.5389
99.3531
60.6036
1748781175081149
7.8947
hfeng-pmm2SNPtvHG002complexvarhet
99.7540
99.5389
99.9700
20.7785
150036695149957458
17.7778
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.3167
99.5384
99.0960
53.8093
66853166876111
18.0328
ltrigg-rtg2SNP*map_l150_m2_e0homalt
99.7345
99.5384
99.9314
70.4233
11645541164787
87.5000
jli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2437
99.5383
98.9508
69.9567
150971509162
12.5000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7686
99.5382
100.0000
50.6863
10131471009500
astatham-gatkSNP*map_sirenhomalt
99.7411
99.5377
99.9454
50.1425
54901255548923026
86.6667
jlack-gatkINDELD1_5HG002complexvarhet
99.5570
99.5377
99.5763
55.9428
2066996206818829
32.9545
hfeng-pmm1SNPtimap_siren*
99.7016
99.5376
99.8660
52.2018
998914649987813442
31.3433
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6240
99.5376
99.7106
36.1655
17228172355
100.0000
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7347
99.5374
99.9328
57.9303
163537616352114
36.3636
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3982
99.5370
97.2851
67.4041
215121566
100.0000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
98.8506
99.5370
98.1735
65.0160
215121544
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7101
99.5369
99.8839
62.7379
343916344244
100.0000
ltrigg-rtg2SNPtimap_l100_m0_e0homalt
99.7358
99.5369
99.9354
58.2970
773836773855
100.0000
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6908
99.5369
99.8452
60.6918
386918386966
100.0000
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.3772
99.5369
99.2181
66.4594
34391634262714
51.8519
gduggal-bwafbSNPtvsegduphomalt
99.6445
99.5368
99.7524
90.8111
322315322388
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
61.5590
859486032
66.6667
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
63.5095
859486032
66.6667
gduggal-snapfbSNPtvHG002complexvarhet
98.4837
99.5363
97.4531
25.4817
1500356991503383929342
8.7045
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5073
99.5362
99.4784
36.9220
3434163433185
27.7778
eyeh-varpipeSNPtvmap_l250_m2_e0het
98.3041
99.5361
97.1022
91.0806
193191910574
7.0175
raldana-dualsentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.0708
858485800
raldana-dualsentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.0708
858485800
ltrigg-rtg2SNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
21.7668
858485900
ltrigg-rtg2SNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
21.7668
858485900
astatham-gatkSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
bgallagher-sentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
astatham-gatkSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0900
99.5359
98.6480
56.8443
66483166409188
96.7033
raldana-dualsentieonSNP*map_l100_m0_e0homalt
99.7198
99.5353
99.9050
58.6521
115665411566118
72.7273
ndellapenna-hhgaSNP*HG002complexvarhet
99.7473
99.5353
99.9601
18.3091
463334216346335318579
42.7027
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.5636
99.5347
95.6691
57.4517
100554710073456383
83.9912
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7194
99.5347
99.9047
51.7499
25241118251642415
62.5000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.3414
99.5344
99.1492
66.7959
309981453099826616
6.0150
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.3414
99.5344
99.1492
66.7959
309981453099826616
6.0150
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2550
99.5338
98.9778
48.7637
83273983278684
97.6744
jmaeng-gatkINDEL*func_cdshet
95.9801
99.5327
92.6724
62.8205
2131215170
0.0000
ckim-dragenINDEL*func_cdshet
97.2603
99.5327
95.0893
57.2519
2131213110
0.0000
eyeh-varpipeSNPtvmap_l250_m1_e0homalt
99.6477
99.5327
99.7630
89.0347
852484222
100.0000