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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 244 245 246 247 248 249 250 251 252 ... 1720 1721 » 12351-12400 / 86044 show all
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7512	99.5449	99.9585	78.7236	2406	11	2406	1	0	0.0000
jpowers-varprowl	SNP	*	*	*	99.5004	99.5447	99.4561	23.3348	3040706	13908	3041157	16632	2670	16.0534
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5103	99.5446	99.4760	35.3827	7214	33	7214	38	38	100.0000
hfeng-pmm2	SNP	ti	map_l100_m2_e0	*	99.5384	99.5445	99.5323	66.9341	48738	223	48731	229	30	13.1004
ltrigg-rtg2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7618	99.5445	99.9801	51.1635	20107	92	20081	4	3	75.0000
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7217	99.5441	99.8999	60.0411	6987	32	6987	7	4	57.1429
egarrison-hhga	SNP	*	segdup	het	99.4921	99.5438	99.4404	89.6178	17238	79	17238	97	4	4.1237
astatham-gatk	SNP	ti	map_siren	homalt	99.7489	99.5437	99.9550	48.8366	37743	173	37737	17	16	94.1176
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7438	99.5435	99.9450	57.4906	16354	75	16352	9	2	22.2222
ltrigg-rtg2	SNP	*	map_l150_m2_e1	homalt	99.7374	99.5434	99.9321	70.4609	11773	54	11779	8	7	87.5000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2583	99.5434	98.9748	37.3981	10683	49	10716	111	5	4.5045
hfeng-pmm3	INDEL	I1_5	*	het	99.7016	99.5433	99.8604	59.2337	78680	361	78661	110	51	46.3636
ckim-gatk	SNP	ti	segdup	het	98.6041	99.5428	97.6830	94.4043	11975	55	11973	284	5	1.7606
ciseli-custom	SNP	*	*	homalt	98.7740	99.5427	98.0170	19.0299	1174765	5397	1168121	23632	10880	46.0393
ltrigg-rtg1	SNP	ti	map_l250_m2_e0	homalt	99.6280	99.5426	99.7136	87.3322	1741	8	1741	5	5	100.0000
hfeng-pmm1	SNP	ti	map_l250_m2_e0	homalt	99.5141	99.5426	99.4857	87.7793	1741	8	1741	9	2	22.2222
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6849	99.5423	99.8279	67.4388	1740	8	1740	3	1	33.3333
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7706	99.5423	100.0000	34.5537	1305	6	1305	0	0
ciseli-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	96.7002	99.5423	94.0159	40.8529	1305	6	1304	83	22	26.5060
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7420	99.5423	99.9426	61.0950	1740	8	1740	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7706	99.5423	100.0000	34.4550	1305	6	1305	0	0
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.5423	99.8852	59.7783	1740	8	1740	2	1	50.0000
ltrigg-rtg2	SNP	ti	map_l125_m2_e0	homalt	99.7442	99.5422	99.9470	65.7720	11306	52	11306	6	6	100.0000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.1387	99.5421	98.7386	58.2561	3913	18	3914	50	1	2.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e1	het	98.2749	99.5420	97.0396	91.1568	1956	9	1934	59	4	6.7797
hfeng-pmm3	INDEL	D6_15	*	homalt	99.3845	99.5416	99.2279	50.7795	6297	29	6297	49	45	91.8367
jlack-gatk	INDEL	D6_15	*	homalt	98.1988	99.5416	96.8918	51.5867	6297	29	6297	202	199	98.5149
ltrigg-rtg2	SNP	ti	map_l250_m0_e0	homalt	99.4273	99.5413	99.3135	89.5279	434	2	434	3	3	100.0000
ltrigg-rtg1	SNP	ti	map_l250_m0_e0	homalt	99.4273	99.5413	99.3135	91.3104	434	2	434	3	3	100.0000
ckim-dragen	SNP	ti	map_l250_m0_e0	homalt	99.3135	99.5413	99.0868	87.9769	434	2	434	4	3	75.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e0	homalt	99.6664	99.5412	99.7919	62.9736	18225	84	18226	38	36	94.7368
hfeng-pmm2	SNP	ti	map_l100_m1_e0	*	99.5399	99.5410	99.5389	65.3094	47711	220	47704	221	30	13.5747
raldana-dualsentieon	SNP	*	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
raldana-dualsentieon	SNP	tv	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
astatham-gatk	SNP	*	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
astatham-gatk	SNP	tv	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
bgallagher-sentieon	SNP	*	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
bgallagher-sentieon	SNP	tv	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
ltrigg-rtg2	SNP	*	*	hetalt	99.2565	99.5408	98.9738	40.5020	867	4	868	9	9	100.0000
ltrigg-rtg2	SNP	tv	*	hetalt	99.2565	99.5408	98.9738	40.5020	867	4	868	9	9	100.0000
hfeng-pmm2	SNP	*	map_siren	het	99.5406	99.5406	99.5405	57.6094	90573	418	90559	418	33	7.8947
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	95.5882	99.5406	91.9378	72.4044	650	3	650	57	55	96.4912
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.6339	99.5404	97.7437	66.8858	1083	5	1083	25	19	76.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.9493	99.5404	98.3651	65.9133	1083	5	1083	18	16	88.8889
rpoplin-dv42	SNP	ti	map_l100_m2_e1	homalt	99.6670	99.5404	99.7940	62.9692	18409	85	18410	38	36	94.7368
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.4993	99.5404	97.4797	67.4289	1083	5	1083	28	22	78.5714
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3205	99.5404	97.1300	67.2155	1083	5	1083	32	26	81.2500
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.0969	99.5403	98.6573	40.9208	6713	31	6760	92	1	1.0870
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7696	99.5402	100.0000	80.2993	3897	18	3897	0	0
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.5504	99.5402	99.5606	75.8969	14504	67	14502	64	17	26.5625

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