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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12301-12350 / 86044 show all
eyeh-varpipeSNP*map_l125_m0_e0het
97.2776
99.5499
95.1068
80.0626
12607571224563017
2.6984
hfeng-pmm1SNPtvmap_l125_m0_e0homalt
99.5050
99.5498
99.4602
72.4501
2211102211124
33.3333
hfeng-pmm2SNPtvmap_l125_m0_e0homalt
99.5050
99.5498
99.4602
72.5691
2211102211124
33.3333
ltrigg-rtg1SNPtimap_l150_m1_e0homalt
99.6993
99.5496
99.8494
70.3647
72943372951111
100.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7040
99.5496
99.8589
54.8699
163557416278238
34.7826
hfeng-pmm2SNPtimap_l100_m2_e1*
99.5423
99.5494
99.5352
66.9275
492622234925523030
13.0435
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
jli-customSNPtvmap_siren*
99.6133
99.5493
99.6773
55.0835
457232074571814836
24.3243
eyeh-varpipeSNPtvmap_l250_m2_e0*
98.7380
99.5489
97.9403
90.6578
2869132853606
10.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7738
99.5485
100.0000
26.8007
441243700
ltrigg-rtg1SNPtimap_l250_m2_e1homalt
99.6047
99.5485
99.6610
87.3743
17648176466
100.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7738
99.5485
100.0000
27.1667
441243700
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2214
99.5485
98.8965
52.5869
11245511926821545
20.9302
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.5851
99.5485
99.6217
39.7050
3969183950156
40.0000
hfeng-pmm1SNPtimap_l250_m2_e1homalt
99.5205
99.5485
99.4924
87.8161
17648176492
22.2222
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.2126
99.5485
98.8789
32.5265
441244154
80.0000
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4242
99.5483
99.3004
56.7770
352591603534324916
6.4257
ltrigg-rtg2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3249
99.5483
99.1025
56.2469
352591603533432023
7.1875
jpowers-varprowlSNPti**
99.5767
99.5483
99.6052
21.1558
20760869421207629582301307
15.8809
raldana-dualsentieonSNPtvmap_l150_m0_e0homalt
99.6608
99.5482
99.7736
73.0800
13226132231
33.3333
astatham-gatkINDEL*map_sirenhomalt
99.4364
99.5480
99.3251
81.5279
26431226491812
66.6667
bgallagher-sentieonINDEL*map_sirenhomalt
99.3618
99.5480
99.1763
81.3504
26431226492213
59.0909
bgallagher-sentieonINDEL*HG002complexvarhet
99.6698
99.5477
99.7922
57.6447
46003209456339561
64.2105
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7448
99.5473
99.9432
61.1393
17598175911
100.0000
ndellapenna-hhgaSNPtimap_l125_m1_e0homalt
99.7415
99.5473
99.9364
64.8588
10995501099577
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.8604
17598175900
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.6441
17598175900
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.3407
17598175900
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7448
99.5473
99.9432
60.9323
17598175911
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5020
99.5471
99.4570
86.4067
10995109965
83.3333
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5922
99.5471
99.6374
86.6820
10995109944
100.0000
ciseli-customSNPtisegduphomalt
98.5690
99.5470
97.6100
88.0096
747134743318299
54.3956
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.1964
99.5470
98.8483
74.0177
14505661450516912
7.1006
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1964
99.5470
98.8483
74.0177
14505661450516912
7.1006
hfeng-pmm1SNPtvHG002complexvarhet
99.7636
99.5469
99.9813
20.8221
150048683149969289
32.1429
jli-customINDELD1_5segdup*
99.5918
99.5467
99.6370
94.3313
10985109841
25.0000
raldana-dualsentieonINDELD1_5segdup*
99.6373
99.5467
99.7280
94.0940
10985110032
66.6667
dgrover-gatkINDELD1_5segdup*
99.5471
99.5467
99.5475
94.9619
10985110052
40.0000
ckim-gatkINDELD1_5segdup*
98.1263
99.5467
96.7458
96.0214
109851100372
5.4054
bgallagher-sentieonSNPtimap_l100_m2_e0*
99.4612
99.5466
99.3760
66.3096
487392224873230650
16.3399
rpoplin-dv42INDELI1_5HG002complexvarhomalt
99.7169
99.5464
99.8881
51.4705
1338761133841514
93.3333
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4405
99.5463
99.3348
79.5031
1075249107527213
18.0556
ltrigg-rtg2SNPtimap_l125_m2_e1homalt
99.7464
99.5462
99.9474
65.8140
11406521140766
100.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6106
99.5460
99.6753
76.5566
15357153553
60.0000
eyeh-varpipeSNPtimap_l125_m1_e0het
98.9460
99.5456
98.3535
75.5124
18183831780129815
5.0336
jlack-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.5658
99.5452
99.5863
69.3755
48152248152010
50.0000
ltrigg-rtg2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4820
99.5452
99.4189
54.5520
553782535542832426
8.0247
bgallagher-sentieonSNPtimap_l100_m1_e0*
99.4715
99.5452
99.3979
64.6493
477132184770628950
17.3010
asubramanian-gatkINDELI1_5*homalt
99.5606
99.5449
99.5763
55.0778
6015327560163256247
96.4844
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7512
99.5449
99.9585
79.2911
240611240610
0.0000