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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 242 243 244 245 246 247 248 249 250 ... 1720 1721 » 12251-12300 / 86044 show all
ltrigg-rtg1	INDEL	*	func_cds	homalt	99.7783	99.5575	100.0000	30.7692	225	1	225	0	0
ltrigg-rtg2	INDEL	*	func_cds	homalt	99.7783	99.5575	100.0000	29.6875	225	1	225	0	0
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4029	99.5574	99.2487	52.2265	17772	79	17835	135	7	5.1852
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7596	99.5574	99.9627	68.6053	5399	24	5353	2	2	100.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7596	99.5574	99.9627	68.6053	5399	24	5353	2	2	100.0000
gduggal-bwafb	SNP	tv	HG002compoundhet	homalt	99.1913	99.5573	98.8280	47.3709	3373	15	3373	40	33	82.5000
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.9160	99.5572	96.3281	83.1889	1349	6	1233	47	30	63.8298
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1246	99.5572	98.6958	41.6434	7419	33	7416	98	0	0.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7464	99.5570	99.9365	52.5475	1573	7	1573	1	0	0.0000
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6893	99.5567	99.8222	56.6808	1123	5	1123	2	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.9264	1123	5	1123	0	0
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.3978	1123	5	1130	0	0
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	49.8447	1123	5	1130	0	0
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7778	99.5565	100.0000	68.6843	1347	6	1340	0	0
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7778	99.5565	100.0000	70.0067	1347	6	1341	0	0
cchapple-custom	INDEL	D1_5	HG002complexvar	homalt	99.5858	99.5565	99.6150	53.3069	10551	47	10092	39	36	92.3077
bgallagher-sentieon	INDEL	I1_5	HG002complexvar	*	99.6940	99.5564	99.8319	56.9171	33215	148	33263	56	45	80.3571
jli-custom	SNP	tv	map_l125_m1_e0	homalt	99.7265	99.5563	99.8973	63.1639	5834	26	5834	6	5	83.3333
ndellapenna-hhga	SNP	tv	map_l125_m1_e0	homalt	99.7180	99.5563	99.8802	65.8321	5834	26	5834	7	6	85.7143
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	95.2283	99.5561	91.2611	45.6295	2467	11	2475	237	8	3.3755
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.1968	99.5561	98.8400	40.7302	2467	11	2471	29	6	20.6897
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7776	99.5561	100.0000	29.2802	2467	11	2466	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2929	99.5560	99.0312	67.2462	17490	78	17480	171	15	8.7719
hfeng-pmm1	INDEL	I1_5	*	het	99.6416	99.5559	99.7275	59.6258	78690	351	78673	215	113	52.5581
ckim-vqsr	SNP	*	func_cds	homalt	99.7774	99.5558	100.0000	21.6155	6948	31	6948	0	0
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9728	99.5552	98.3972	40.4460	6714	30	6753	110	5	4.5455
eyeh-varpipe	SNP	ti	map_l125_m2_e0	het	98.9240	99.5550	98.3009	76.7289	18792	84	18398	318	15	4.7170
ckim-gatk	SNP	ti	HG002complexvar	het	99.7549	99.5549	99.9557	17.5388	313365	1401	313315	139	50	35.9712
eyeh-varpipe	SNP	ti	map_l125_m2_e1	het	98.9249	99.5547	98.3030	76.7768	19002	85	18595	321	15	4.6729
ndellapenna-hhga	SNP	tv	segdup	*	99.4730	99.5546	99.3915	90.2986	8494	38	8494	52	18	34.6154
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1654	99.5545	98.7794	37.2444	18102	81	18127	224	7	3.1250
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7668	99.5543	99.9801	61.8690	10052	45	10052	2	2	100.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e1	*	98.7186	99.5542	97.8969	90.7430	2903	13	2886	62	6	9.6774
hfeng-pmm1	SNP	*	map_siren	*	99.7072	99.5541	99.8607	53.5315	145576	652	145556	203	64	31.5271
asubramanian-gatk	SNP	*	func_cds	*	99.6470	99.5537	99.7405	30.0602	18069	81	18066	47	1	2.1277
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6201	99.5533	99.6870	54.4597	6686	30	6688	21	7	33.3333
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3799	99.5525	99.2079	75.4457	48055	216	47847	382	297	77.7487
jlack-gatk	INDEL	I16_PLUS	*	homalt	95.7191	99.5516	92.1708	70.2698	1554	7	1554	132	127	96.2121
hfeng-pmm2	INDEL	I16_PLUS	*	homalt	98.0751	99.5516	96.6418	69.9214	1554	7	1554	54	51	94.4444
raldana-dualsentieon	SNP	ti	map_siren	*	99.5625	99.5516	99.5734	52.8084	99905	450	99890	428	23	5.3738
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.4314	99.5510	99.3121	70.6126	6208	28	6208	43	21	48.8372
ghariani-varprowl	SNP	tv	HG002complexvar	*	98.9457	99.5507	98.3479	26.3760	245046	1106	245266	4120	790	19.1748
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5603	99.5507	99.5700	75.2360	5096	23	5094	22	10	45.4545
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5214	99.5507	99.4922	74.9449	5096	23	5094	26	13	50.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5798	99.5507	99.6089	75.0780	5096	23	5094	20	10	50.0000
jmaeng-gatk	INDEL	*	func_cds	*	97.9088	99.5506	96.3203	53.9841	443	2	445	17	0	0.0000
ckim-dragen	INDEL	*	func_cds	*	98.4444	99.5506	97.3626	49.5006	443	2	443	12	1	8.3333
egarrison-hhga	INDEL	*	func_cds	*	99.4388	99.5506	99.3274	89.6520	443	2	443	3	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4181	99.5505	99.2861	75.9770	48054	217	47844	344	262	76.1628
ndellapenna-hhga	SNP	*	map_l125_m1_e0	homalt	99.7333	99.5504	99.9169	65.2026	16829	76	16829	14	13	92.8571

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