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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12201-12250 / 86044 show all
hfeng-pmm2SNPtimap_l250_m1_e0homalt
99.5025
99.5644
99.4406
86.8749
16007160092
22.2222
hfeng-pmm3SNPtimap_l250_m1_e0homalt
99.5025
99.5644
99.4406
86.8266
16007160092
22.2222
gduggal-snapfbSNP*HG002complexvarhet
98.8655
99.5639
98.1768
21.9725
46347020304642358621899
10.4280
ndellapenna-hhgaSNPtimap_l125_m2_e1homalt
99.7508
99.5636
99.9387
67.6903
11408501140877
100.0000
bgallagher-sentieonSNP*map_l100_m1_e0*
99.4317
99.5636
99.3001
65.4224
720873167207650881
15.9449
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2985
99.5634
99.0351
56.4261
6157276158601
1.6667
hfeng-pmm2SNP*map_l100_m2_e0*
99.5209
99.5633
99.4785
67.6209
736413237363038647
12.1762
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5267
99.5633
99.4902
73.5096
13686136670
0.0000
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7085
99.5633
99.8541
71.1368
13686136920
0.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.4273
99.5631
99.2919
54.6106
182381823130
0.0000
jmaeng-gatkINDEL*HG002compoundhethomalt
60.0968
99.5627
43.0372
84.8886
6833683904898
99.3363
jlack-gatkINDEL*HG002compoundhethomalt
47.4306
99.5627
31.1304
79.5488
683368315111501
99.3382
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6443
99.5626
99.7262
54.5715
3642163642105
50.0000
ndellapenna-hhgaSNP*map_l125_m2_e0homalt
99.7405
99.5626
99.9191
67.9668
1729976172991413
92.8571
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6989
99.5626
99.8355
53.1956
364216364161
16.6667
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4536
99.5624
99.3450
70.1434
910491060
0.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.1418
99.5624
98.7248
70.1554
9104929121
8.3333
ltrigg-rtg2SNP*map_l125_m1_e0homalt
99.7511
99.5623
99.9406
63.1402
168317416832109
90.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_11to50*
97.4056
99.5621
95.3406
49.3281
10685471049751352
10.1365
jli-customINDELD1_5HG002complexvarhet
99.7322
99.5618
99.9033
54.7904
206749120667206
30.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7288
99.5616
99.8965
59.3927
386117386140
0.0000
jli-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4524
99.5614
99.3435
66.3352
908490864
66.6667
ltrigg-rtg1INDELD1_5map_l150_m1_e0homalt
99.3435
99.5614
99.1266
85.6156
227122722
100.0000
rpoplin-dv42INDELD1_5map_l150_m1_e0homalt
98.9107
99.5614
98.2684
87.7971
227122744
100.0000
ckim-dragenINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6869
99.5614
95.8817
72.8731
90849083938
97.4359
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0815
99.5612
98.6064
70.5927
285861262858640425
6.1881
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0815
99.5612
98.6064
70.5927
285861262858640425
6.1881
ltrigg-rtg2SNP*map_l100_m0_e0homalt
99.7457
99.5611
99.9309
58.9350
11569511156786
75.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.2784
99.5607
95.0984
65.7462
294613294915210
6.5790
jlack-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.1705
99.5602
96.8190
57.4112
3622163622119117
98.3193
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.6169
99.5602
99.6736
72.0020
455012014549714951
34.2282
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.6169
99.5602
99.6736
72.0020
455012014549714951
34.2282
cchapple-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7236
99.5599
99.8877
53.8466
1470565151251710
58.8235
ndellapenna-hhgaSNPtimap_l125_m2_e0homalt
99.7486
99.5598
99.9381
67.6520
11308501130877
100.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6329
99.5598
99.7061
77.3995
13576135742
50.0000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6695
99.5598
99.7794
76.6162
13576135730
0.0000
ghariani-varprowlSNPtisegduphet
97.4023
99.5594
95.3366
92.6943
1197753119805862
0.3413
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1247
99.5589
96.7314
45.9773
9479429470320309
96.5625
dgrover-gatkINDEL*HG002complexvarhet
99.6862
99.5586
99.8141
57.9282
46008204456348551
60.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6822
99.5584
99.8063
74.0988
360716360773
42.8571
hfeng-pmm2SNP*map_l100_m1_e0*
99.5195
99.5580
99.4810
66.0017
720833207207237647
12.5000
egarrison-hhgaSNPtvmap_l100_m0_e0homalt
99.7265
99.5580
99.8956
63.0055
382917382943
75.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.3332
99.5580
99.1095
50.6288
1036146103509384
90.3226
raldana-dualsentieonSNPtvmap_l100_m0_e0homalt
99.7265
99.5580
99.8956
59.9142
382917382942
50.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7559
99.5579
99.9547
55.7919
11035491103252
40.0000
raldana-dualsentieonSNPtvHG002complexvarhet
99.7643
99.5575
99.9720
20.9789
150064667149985429
21.4286
qzeng-customINDEL*func_cdshomalt
97.2362
99.5575
95.0207
31.7280
2251229122
16.6667
cchapple-customINDEL*func_cdshomalt
99.5575
99.5575
99.5575
33.1361
225122511
100.0000