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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 240 241 242 243 244 245 246 247 248 ... 1720 1721 » 12151-12200 / 86044 show all
raldana-dualsentieon	SNP	tv	map_l150_m1_e0	homalt	99.7335	99.5692	99.8983	67.6642	3929	17	3929	4	2	50.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6888	99.5692	99.8086	46.3323	6241	27	6258	12	2	16.6667
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	homalt	99.7354	99.5686	99.9028	65.6605	11309	49	11309	11	9	81.8182
ltrigg-rtg1	SNP	*	map_l125_m0_e0	homalt	99.7091	99.5679	99.8506	69.2643	6683	29	6683	10	10	100.0000
jli-custom	SNP	tv	map_l125_m2_e0	homalt	99.7336	99.5679	99.8999	65.8835	5991	26	5991	6	5	83.3333
ndellapenna-hhga	SNP	tv	map_l125_m2_e0	homalt	99.7253	99.5679	99.8833	68.5442	5991	26	5991	7	6	85.7143
hfeng-pmm2	SNP	*	map_l100_m2_e1	*	99.5245	99.5678	99.4812	67.6245	74414	323	74403	388	47	12.1134
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.8699	99.5676	98.1818	59.8602	2533	11	2538	47	2	4.2553
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.6723	99.5675	97.7930	57.7847	3914	17	3988	90	2	2.2222
ltrigg-rtg2	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3248	99.5674	99.0833	60.5130	17492	76	17510	162	12	7.4074
bgallagher-sentieon	SNP	*	map_l100_m2_e0	*	99.4275	99.5674	99.2880	67.0766	73644	320	73633	528	81	15.3409
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5315	99.5674	99.4957	65.2740	1381	6	1381	7	0	0.0000
hfeng-pmm3	SNP	ti	map_siren	het	99.6838	99.5672	99.8007	53.2950	62112	270	62103	124	11	8.8710
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7831	99.5671	100.0000	29.1217	460	2	460	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7831	99.5671	100.0000	29.5559	460	2	460	0	0
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	29.8326	460	2	460	1	1	100.0000
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1323	99.5671	98.7013	53.8462	460	2	456	6	6	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	30.2572	460	2	460	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	28.3048	460	2	460	1	1	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	29.4028	460	2	460	1	1	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7831	99.5671	100.0000	57.2491	460	2	460	0	0
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	93.6725	99.5667	88.4372	45.0706	4596	20	4612	603	12	1.9901
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5496	99.5667	99.5326	76.5043	2987	13	2981	14	4	28.5714
ltrigg-rtg1	SNP	ti	map_l150_m2_e0	homalt	99.7107	99.5667	99.8552	72.6188	7583	33	7584	11	11	100.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5829	99.5667	99.5991	76.3025	2987	13	2981	12	4	33.3333
jmaeng-gatk	INDEL	D1_5	HG002complexvar	het	99.6962	99.5666	99.8262	56.4161	20675	90	20679	36	18	50.0000
bgallagher-sentieon	INDEL	D1_5	segdup	het	99.4950	99.5665	99.4236	94.8997	689	3	690	4	0	0.0000
ndellapenna-hhga	SNP	*	map_l125_m2_e1	homalt	99.7429	99.5665	99.9199	68.0072	17456	76	17456	14	13	92.8571
ckim-gatk	INDEL	D1_5	segdup	het	97.3199	99.5665	95.1724	96.5122	689	3	690	35	0	0.0000
ltrigg-rtg1	SNP	tv	segdup	*	98.9694	99.5663	98.3796	89.2053	8495	37	8500	140	20	14.2857
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	91.8485	99.5662	85.2412	78.3800	918	4	901	156	95	60.8974
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4583	99.5662	99.3506	78.2639	918	4	918	6	3	50.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4772	99.5662	99.3884	73.4002	918	4	975	6	4	66.6667
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.9557	99.5662	98.3527	76.9179	918	4	1015	17	6	35.2941
eyeh-varpipe	SNP	*	map_l100_m0_e0	het	97.2093	99.5661	94.9614	74.6186	21113	92	20524	1089	21	1.9284
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7680	99.5658	99.9709	62.5612	3440	15	3440	1	1	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7569	99.5658	99.9487	80.8702	3898	17	3898	2	0	0.0000
egarrison-hhga	SNP	ti	map_l150_m0_e0	homalt	99.7098	99.5654	99.8547	73.4497	2749	12	2749	4	4	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5652	99.5652	99.5652	67.4221	229	1	229	1	1	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3492	99.5652	99.1342	68.2256	229	1	229	2	2	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3492	99.5652	99.1342	68.6141	229	1	229	2	2	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.9201	99.5652	98.2833	73.0012	229	1	229	4	4	100.0000
eyeh-varpipe	SNP	*	map_l150_m1_e0	het	97.8416	99.5651	96.1767	79.2991	19232	84	18640	741	22	2.9690
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4574	99.5649	99.3502	34.3868	2746	12	2599	17	7	41.1765
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7199	99.5649	99.8753	57.4423	1602	7	1602	2	0	0.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7820	99.5649	100.0000	36.1989	2746	12	2746	0	0
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7820	99.5649	100.0000	51.8715	1602	7	1633	0	0
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7820	99.5649	100.0000	50.4551	1602	7	1633	0	0
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.3744	99.5648	99.1847	37.2000	3889	17	3893	32	7	21.8750
raldana-dualsentieon	SNP	tv	map_l150_m2_e1	homalt	99.7335	99.5646	99.9029	70.1838	4116	18	4116	4	2	50.0000

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