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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 239 240 241 242 243 244 245 246 247 ... 1720 1721 » 12101-12150 / 86044 show all
egarrison-hhga	SNP	ti	map_l125_m0_e0	homalt	99.7435	99.5769	99.9106	67.7962	4472	19	4472	4	4	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5180	99.5769	99.4593	62.5780	11061	47	11036	60	22	36.6667
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7830	99.5760	99.9909	55.2895	11037	47	11034	1	0	0.0000
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.2176	99.5759	93.0785	81.7232	5400	23	5406	402	172	42.7861
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.2176	99.5759	93.0785	81.7232	5400	23	5406	402	172	42.7861
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.4931	99.5753	99.4111	78.7569	4220	18	4220	25	5	20.0000
ndellapenna-hhga	SNP	ti	HG002complexvar	het	99.7687	99.5752	99.9630	16.8677	313429	1337	313430	116	49	42.2414
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0230	99.5751	98.4769	55.3942	3750	16	3750	58	54	93.1034
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0230	99.5751	98.4769	55.3942	3750	16	3750	58	54	93.1034
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4713	99.5745	99.3684	67.9054	468	2	472	3	3	100.0000
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	homalt	99.7370	99.5745	99.9001	63.0037	10998	47	10998	11	9	81.8182
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.0789	468	2	469	1	1	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.5003	468	2	469	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7868	99.5745	100.0000	69.2913	468	2	468	0	0
bgallagher-sentieon	SNP	*	map_l125_m1_e0	homalt	99.7275	99.5741	99.8813	63.4132	16833	72	16833	20	15	75.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e0	homalt	99.7291	99.5741	99.8845	66.0253	17301	74	17301	20	15	75.0000
ltrigg-rtg2	SNP	*	map_l125_m2_e0	homalt	99.7578	99.5741	99.9422	65.9494	17301	74	17302	10	9	90.0000
jli-custom	SNP	*	map_l125_m1_e0	homalt	99.7452	99.5741	99.9169	62.6179	16833	72	16833	14	13	92.8571
jli-custom	SNP	*	map_l125_m2_e0	homalt	99.7463	99.5741	99.9191	65.3928	17301	74	17301	14	13	92.8571
ltrigg-rtg2	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4910	99.5737	99.4084	59.3516	27560	118	27559	164	14	8.5366
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7863	99.5736	100.0000	84.3551	467	2	467	0	0
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.6081	99.5736	81.4558	88.2628	467	2	470	107	88	82.2430
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7626	99.5735	99.9524	54.0128	14707	63	14708	7	2	28.5714
bgallagher-sentieon	SNP	tv	map_l125_m1_e0	homalt	99.7095	99.5734	99.8460	64.1604	5835	25	5835	9	6	66.6667
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7862	99.5733	100.0000	36.3469	700	3	690	0	0
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7151	99.5733	99.8573	46.9743	700	3	700	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7151	99.5733	99.8573	47.3724	700	3	700	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7862	99.5733	100.0000	46.7275	700	3	700	0	0
hfeng-pmm1	INDEL	D6_15	*	homalt	99.4474	99.5732	99.3220	50.6075	6299	27	6299	43	42	97.6744
hfeng-pmm3	SNP	tv	map_l250_m2_e0	homalt	99.3610	99.5731	99.1498	88.0265	933	4	933	8	4	50.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e0	homalt	99.6784	99.5731	99.7840	89.6709	933	4	924	2	2	100.0000
jli-custom	SNP	*	map_siren	*	99.6458	99.5726	99.7192	52.4710	145603	625	145591	410	101	24.6341
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	homalt	99.7377	99.5724	99.9037	65.6841	11409	49	11409	11	9	81.8182
asubramanian-gatk	SNP	ti	func_cds	*	99.6805	99.5721	99.7892	27.6472	13728	59	13726	29	1	3.4483
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	het	99.1089	99.5719	98.6501	70.0769	15351	66	15347	210	25	11.9048
jli-custom	SNP	tv	map_l125_m2_e1	homalt	99.7361	99.5719	99.9009	65.9064	6048	26	6048	6	5	83.3333
ndellapenna-hhga	SNP	tv	map_l125_m2_e1	homalt	99.7279	99.5719	99.8844	68.5879	6048	26	6048	7	6	85.7143
hfeng-pmm3	INDEL	D1_5	map_siren	homalt	99.6576	99.5719	99.7434	77.6311	1163	5	1166	3	3	100.0000
hfeng-pmm1	INDEL	D1_5	map_siren	homalt	99.7001	99.5719	99.8286	78.3166	1163	5	1165	2	2	100.0000
ckim-dragen	INDEL	I1_5	HG002complexvar	het	99.6858	99.5712	99.8007	57.6433	18111	78	18030	36	22	61.1111
ltrigg-rtg1	SNP	ti	map_l150_m2_e1	homalt	99.7136	99.5710	99.8566	72.6687	7660	33	7662	11	11	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4891	99.5708	99.4077	75.9619	21805	94	21817	130	120	92.3077
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0316	99.5706	98.4983	37.0609	7420	32	7412	113	2	1.7699
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6797	99.5705	99.7890	51.2505	11824	51	11826	25	20	80.0000
bgallagher-sentieon	SNP	*	map_l100_m2_e1	*	99.4314	99.5705	99.2927	67.0857	74416	321	74405	530	81	15.2830
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5015	99.5702	99.4329	75.1639	5097	22	5085	29	11	37.9310
raldana-dualsentieon	SNP	*	map_siren	*	99.5640	99.5698	99.5582	54.3006	145599	629	145576	646	30	4.6440
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.6481	99.5697	99.7266	69.7354	31009	134	31007	85	34	40.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.6481	99.5697	99.7266	69.7354	31009	134	31007	85	34	40.0000
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5967	99.5697	99.6236	75.3470	33093	143	33087	125	100	80.0000

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