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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12051-12100 / 86044 show all
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7378
99.5812
99.8950
79.8902
951495110
0.0000
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6333
99.5812
99.6855
77.3934
951495132
66.6667
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6855
99.5812
99.7901
80.3667
951495121
50.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7378
99.5812
99.8950
80.4517
951495111
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6855
99.5812
99.7901
80.3667
951495121
50.0000
jli-customSNPtimap_l125_m2_e1homalt
99.7552
99.5811
99.9299
65.1529
11410481141088
100.0000
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4422
99.5809
99.3038
58.0347
4277184279305
16.6667
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.1495
99.5808
98.7219
57.2055
66512866438683
96.5116
jmaeng-gatkSNPtv*het
99.5410
99.5807
99.5013
31.3482
5892152481589142295352
1.7609
hfeng-pmm2SNPtvmap_sirenhet
99.5196
99.5806
99.4588
60.5491
284891202848415514
9.0323
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7626
99.5802
99.9456
54.3815
14708621470984
50.0000
ltrigg-rtg2INDELI1_5*homalt
99.7495
99.5797
99.9200
48.8836
60173254599554838
79.1667
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.6843
99.5795
99.7893
29.7830
14216142131
33.3333
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5761
99.5795
99.5726
29.1625
14216139862
33.3333
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5047
99.5794
99.4300
77.4061
6629286629387
18.4211
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5944
99.5794
99.6093
76.9540
6629286629266
23.0769
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50het
91.9331
99.5790
85.3775
44.4518
2129921373664
1.0929
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7095
99.5789
99.8404
58.9584
28141119281444519
42.2222
gduggal-snapfbSNPtvHG002complexvar*
98.7938
99.5787
98.0211
25.3464
24511810372454404955529
10.6761
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
98.2300
99.5784
96.9176
63.0014
10865461087934649
14.1618
hfeng-pmm2INDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7886
99.5781
100.0000
25.2366
236123700
hfeng-pmm3INDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7886
99.5781
100.0000
25.0000
236123700
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0270
99.5781
96.5235
48.1882
23601023608584
98.8235
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7886
99.5781
100.0000
25.0000
236123700
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5789
99.5781
99.5798
24.6835
236123711
100.0000
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7886
99.5781
100.0000
24.2812
236123700
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7886
99.5781
100.0000
23.8710
236123600
cchapple-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
99.5781
0.0000
0.0000
2361000
ckim-gatkINDEL*HG002complexvarhet
99.6665
99.5780
99.7552
57.8728
460171954563611264
57.1429
jli-customSNP*map_l125_m2_e1homalt
99.7486
99.5779
99.9199
65.4177
1745874174581413
92.8571
ltrigg-rtg2SNP*map_l125_m2_e1homalt
99.7600
99.5779
99.9428
65.9933
174587417465109
90.0000
bgallagher-sentieonSNP*map_l125_m2_e1homalt
99.7315
99.5779
99.8856
66.0476
1745874174582015
75.0000
eyeh-varpipeSNP*map_l150_m2_e0het
97.8706
99.5778
96.2209
80.3517
20048851942776322
2.8834
jli-customSNPtimap_l125_m2_e0homalt
99.7530
99.5774
99.9293
65.1271
11310481131088
100.0000
jmaeng-gatkINDELI1_5segduphomalt
99.4720
99.5772
99.3671
92.8539
471247133
100.0000
bgallagher-sentieonINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.7775
471247122
100.0000
astatham-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.7984
471247122
100.0000
raldana-dualsentieonINDELI1_5segduphomalt
99.4720
99.5772
99.3671
92.4798
471247133
100.0000
ckim-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
eyeh-varpipeSNPtvmap_l250_m2_e1homalt
99.6815
99.5772
99.7861
89.7714
942493322
100.0000
gduggal-bwafbINDELI1_5segduphomalt
99.3671
99.5772
99.1579
92.9136
471247144
100.0000
hfeng-pmm3SNPtvmap_l250_m2_e1homalt
99.3671
99.5772
99.1579
88.1116
942494284
50.0000
hfeng-pmm2INDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.4837
471247122
100.0000
hfeng-pmm3INDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.3820
471247122
100.0000
hfeng-pmm1INDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.5664
471247122
100.0000
jli-customINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.5135
471247122
100.0000
ckim-vqsrINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
dgrover-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8776
471247122
100.0000
gduggal-snapfbSNPtiHG002complexvarhet
99.0494
99.5771
98.5273
20.1517
31343513313138974692557
11.8713
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.5450
99.5769
99.5131
63.1488
1106147110365417
31.4815