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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 237 238 239 240 241 242 243 244 245 ... 1720 1721 » 12001-12050 / 86044 show all
hfeng-pmm3	SNP	*	map_l100_m1_e0	*	99.6620	99.5870	99.7371	63.4436	72104	299	72093	190	31	16.3158
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.4922	99.5870	99.3976	71.7079	3135	13	3135	19	9	47.3684
rpoplin-dv42	INDEL	D1_5	map_l150_m2_e0	homalt	98.9733	99.5868	98.3673	88.4051	241	1	241	4	4	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m2_e0	homalt	99.3814	99.5868	99.1770	86.5150	241	1	241	2	2	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7927	99.5863	100.0000	78.9598	2407	10	2407	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.9893	2407	10	2407	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.8523	2407	10	2407	1	1	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	73.0075	2407	10	2407	1	1	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7466	99.5860	99.9077	57.3042	28143	117	28146	26	19	73.0769
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5173	99.5860	99.4487	75.8037	3608	15	3608	20	9	45.0000
astatham-gatk	SNP	tv	func_cds	het	99.7173	99.5860	99.8490	31.6916	2646	11	2645	4	0	0.0000
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	het	99.1255	99.5859	98.6693	71.4407	15872	66	15868	214	25	11.6822
hfeng-pmm3	SNP	tv	HG002complexvar	het	99.7826	99.5854	99.9807	20.9857	150106	625	150027	29	6	20.6897
ltrigg-rtg1	INDEL	D1_5	*	homalt	99.7747	99.5851	99.9650	56.3253	48723	203	48596	17	16	94.1176
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7876	99.5850	99.9909	55.4353	11038	46	11035	1	0	0.0000
hfeng-pmm3	SNP	ti	map_l100_m1_e0	*	99.6742	99.5848	99.7638	62.8483	47732	199	47725	113	21	18.5841
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5600	99.5848	99.5352	55.2358	55400	231	55463	259	19	7.3359
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2133	99.5848	98.8446	73.6714	33098	138	33109	387	353	91.2145
ltrigg-rtg1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5720	99.5845	99.5594	59.6473	27563	115	27568	122	11	9.0164
bgallagher-sentieon	SNP	tv	map_l125_m2_e0	homalt	99.7171	99.5845	99.8500	66.6926	5992	25	5992	9	6	66.6667
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6872	99.5842	99.7904	53.5992	479	2	476	1	1	100.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7917	99.5842	100.0000	59.1297	479	2	479	0	0
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5789	99.5842	99.5736	56.7742	479	2	467	2	1	50.0000
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7917	99.5842	100.0000	52.9026	479	2	503	0	0
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7917	99.5842	100.0000	51.7737	479	2	503	0	0
mlin-fermikit	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.7656	99.5841	96.0122	62.9104	20115	84	20152	837	723	86.3799
rpoplin-dv42	SNP	tv	segdup	het	99.6497	99.5839	99.7157	91.3241	5265	22	5261	15	0	0.0000
raldana-dualsentieon	SNP	tv	map_l150_m2_e0	homalt	99.7424	99.5836	99.9017	70.2246	4066	17	4066	4	2	50.0000
jli-custom	SNP	ti	map_l125_m1_e0	homalt	99.7551	99.5835	99.9273	62.3216	10999	46	10999	8	8	100.0000
ltrigg-rtg1	INDEL	*	segdup	homalt	99.6351	99.5833	99.6868	92.9210	956	4	955	3	3	100.0000
raldana-dualsentieon	INDEL	*	segdup	homalt	99.2731	99.5833	98.9648	93.2239	956	4	956	10	9	90.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4452	99.5833	99.3075	87.8041	717	3	717	5	4	80.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4452	99.5833	99.3075	87.8041	717	3	717	5	4	80.0000
ckim-vqsr	SNP	ti	func_cds	homalt	99.7910	99.5829	100.0000	20.1550	5253	22	5253	0	0
hfeng-pmm3	SNP	*	map_l125_m0_e0	homalt	99.5977	99.5828	99.6125	70.7306	6684	28	6684	26	9	34.6154
eyeh-varpipe	SNP	*	map_l150_m2_e1	het	97.8792	99.5826	96.2332	80.4169	20278	85	19646	769	22	2.8609
gduggal-bwafb	SNP	*	HG002compoundhet	homalt	99.2787	99.5826	98.9767	38.6655	10737	45	10736	111	91	81.9820
jli-custom	SNP	ti	map_siren	*	99.6599	99.5825	99.7375	51.1882	99936	419	99929	263	66	25.0951
hfeng-pmm3	SNP	*	map_siren	het	99.6837	99.5824	99.7852	54.5786	90611	380	90597	195	18	9.2308
ckim-dragen	SNP	tv	map_siren	homalt	99.7415	99.5824	99.9011	51.8437	17168	72	17170	17	15	88.2353
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6976	99.5818	99.8136	41.7639	2143	9	2142	4	4	100.0000
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2731	99.5818	98.9663	47.1998	2143	9	2202	23	5	21.7391
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7439	99.5818	99.9065	40.0728	2143	9	2138	2	1	50.0000
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	het	99.1197	99.5817	98.6621	71.4019	15711	66	15707	213	25	11.7371
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5820	99.5816	99.5825	75.9054	476	2	477	2	2	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.0769	99.5816	96.6171	61.4099	714	3	714	25	24	96.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.3471	99.5816	97.1429	61.6188	714	3	714	21	20	95.2381
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5464	99.5815	99.5114	49.8381	27842	117	27901	137	8	5.8394
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4861	99.5813	99.3911	58.2577	8325	35	8325	51	50	98.0392
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4861	99.5813	99.3911	58.2577	8325	35	8325	51	50	98.0392

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