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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11951-12000 / 86044 show all
hfeng-pmm1SNP*map_l250_m1_e0homalt
99.4527
99.5940
99.3117
86.9979
2453102453176
35.2941
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7866
99.5939
99.9801
57.0879
10056411003622
100.0000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7421
99.5938
99.8908
50.6550
147106014636167
43.7500
rpoplin-dv42SNPtiHG002compoundhet*
99.6565
99.5938
99.7193
35.2092
1740771174054942
85.7143
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.1964
99.5935
96.8379
59.5200
49024901615
93.7500
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.0981
99.5935
96.6469
61.7358
49024901716
94.1176
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.6908
99.5935
97.8044
62.3591
4902490119
81.8182
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.6908
99.5935
97.8044
62.6398
4902490119
81.8182
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.5915
99.5935
97.6096
62.3406
49024901211
91.6667
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.6908
99.5935
97.8044
62.6398
4902490119
81.8182
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.4624
99.5933
99.3319
58.5091
83263483265656
100.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.4624
99.5933
99.3319
58.5091
83263483265656
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7788
99.5931
99.9652
63.6860
11505471150543
75.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7788
99.5931
99.9652
63.6860
11505471150543
75.0000
eyeh-varpipeSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.1915
99.5930
94.9031
45.9580
18109741742893671
7.5855
eyeh-varpipeSNPtvmap_l150_m0_e0*
95.6512
99.5927
92.0098
83.3079
41571741343598
2.2284
egarrison-hhgaSNPtisegduphet
99.5306
99.5927
99.4687
89.2156
119814911981642
3.1250
ckim-vqsrINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7592
99.5922
99.9267
60.1242
163626716361121
8.3333
hfeng-pmm3SNPtvmap_l100_m1_e0*
99.6386
99.5919
99.6854
64.5700
24401100243977710
12.9870
hfeng-pmm2SNPtvmap_l100_m1_e0*
99.4801
99.5919
99.3687
67.2876
244011002439715517
10.9677
hfeng-pmm3SNP*map_l100_m2_e0*
99.6651
99.5917
99.7386
65.1842
736623027365119331
16.0622
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7697
99.5913
99.9487
76.0057
389916389922
100.0000
ciseli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
98.1931
99.5911
96.8338
44.7388
2192922027234
47.2222
ciseli-customSNPti*homalt
98.8778
99.5909
98.1749
17.4213
7997543285797240148217334
49.4838
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
95.5044
99.5907
91.7402
55.4244
14606145513124
18.3206
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7268
99.5907
99.8632
46.2500
14606146021
50.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.3316
99.5905
99.0741
54.4458
2675112675250
0.0000
hfeng-pmm3SNP*map_l250_m2_e0homalt
99.4794
99.5905
99.3685
87.8350
2675112675176
35.2941
hfeng-pmm1SNP*map_l250_m2_e0homalt
99.4794
99.5905
99.3685
87.8799
2675112675176
35.2941
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.3868
99.5904
99.1841
39.0236
1945819451616
100.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50*
98.6463
99.5904
97.7199
44.7612
3890163900919
9.8901
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7564
99.5904
99.9230
28.4060
389016389130
0.0000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
95.3176
99.5904
91.3963
41.9328
194581944183182
99.4536
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.0973
99.5904
96.6483
30.9022
1945819326767
100.0000
ndellapenna-hhgaSNP*segdup*
99.5371
99.5903
99.4839
89.2221
279521152795214551
35.1724
ckim-vqsrINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
97.8852
99.5902
96.2376
72.0686
48624861918
94.7368
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
97.8852
99.5902
96.2376
72.0686
48624861918
94.7368
hfeng-pmm3SNPtimap_l100_m2_e1*
99.6774
99.5898
99.7651
64.5884
492822034927511621
18.1034
rpoplin-dv42SNP*HG002compoundhet*
99.6493
99.5895
99.7091
40.7188
25716106257077561
81.3333
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7696
99.5895
99.9503
57.3476
2814411628146147
50.0000
gduggal-snapfbSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.4911
99.5894
99.3930
57.8569
60632560593715
40.5405
gduggal-bwafbSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7040
99.5894
99.8189
55.7321
60632560631110
90.9091
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.0807
99.5893
98.5772
65.8570
485248577
100.0000
hfeng-pmm1SNPtvmap_siren*
99.7188
99.5885
99.8494
56.2301
45741189457346922
31.8841
bgallagher-sentieonSNPtvmap_l125_m2_e1homalt
99.7197
99.5884
99.8514
66.7125
604925604996
66.6667
ltrigg-rtg1SNPtimap_l100_m0_e0homalt
99.7102
99.5884
99.8324
61.6545
77423277421313
100.0000
ndellapenna-hhgaSNPtvHG002complexvar*
99.7569
99.5881
99.9262
21.8704
2451381014245164181131
72.3757
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4089
99.5877
99.2308
76.0442
4807219947859371265
71.4286
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7292
99.5876
99.8713
60.0265
1086645108661410
71.4286
hfeng-pmm3SNPtimap_l100_m2_e0*
99.6760
99.5874
99.7647
64.5930
487592024875211521
18.2609