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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11901-11950 / 86044 show all
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.8086
99.5997
98.0299
75.0492
1244512442520
80.0000
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.8086
99.5997
98.0299
75.0492
1244512442520
80.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
79.6677
14926149211
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
79.8733
14926149211
100.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
82.3251
14926149210
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7326
99.5995
99.8661
79.1457
14926149221
50.0000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.8031
99.5995
90.4474
84.6880
149261496158129
81.6456
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4970
99.5995
99.3948
81.7770
14926147898
88.8889
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
82.9644
14926149210
0.0000
hfeng-pmm3INDELI6_15*homalt
98.2839
99.5993
97.0028
48.9358
6214256214192191
99.4792
hfeng-pmm1INDELI6_15*homalt
98.1442
99.5993
96.7310
48.9389
6214256214210209
99.5238
cchapple-customINDELI6_15*homalt
98.0872
99.5993
96.6202
48.7819
6214256175216214
99.0741
ciseli-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
97.2393
99.5982
94.9895
38.3851
272711271114353
37.0629
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7622
99.5982
99.9267
30.6657
272711272722
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7987
99.5982
100.0000
27.0777
272711272000
hfeng-pmm1SNP*map_l125_m0_e0homalt
99.6052
99.5977
99.6126
70.8610
6685276685269
34.6154
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.2906
99.5974
98.9856
37.6602
7422307416762
2.6316
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.0581
99.5974
96.5657
46.5037
74223073952639
3.4221
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7242
99.5972
99.8516
52.5270
1013741100921511
73.3333
rpoplin-dv42INDELD1_5map_l150_m2_e1homalt
98.8000
99.5968
98.0159
88.3710
247124755
100.0000
ltrigg-rtg1INDELD1_5map_l150_m2_e1homalt
99.3980
99.5968
99.2000
86.4352
247124822
100.0000
cchapple-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4978
99.5967
99.3992
57.0007
17779721786710827
25.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7590
99.5966
99.9219
57.4394
28146114281482215
68.1818
rpoplin-dv42SNPtvHG002compoundhet*
99.6523
99.5965
99.7081
48.4905
88873688802619
73.0769
jlack-gatkSNPtvHG002compoundhet*
99.3236
99.5965
99.0521
49.7619
88873688828524
28.2353
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6572
99.5964
99.7181
27.1206
246810247670
0.0000
ckim-dragenINDEL**het
99.4503
99.5962
99.3048
61.2221
1933497841928411350335
24.8148
bgallagher-sentieonSNPtvmap_l100_m1_e0*
99.3526
99.5959
99.1104
66.8404
24402992439821931
14.1553
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.0901
99.5957
98.5896
55.8133
6159256291902
2.2222
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7395
99.5954
99.8841
36.0267
17237172422
100.0000
hfeng-pmm1SNP*map_l250_m2_e1homalt
99.4855
99.5953
99.3759
87.9341
2707112707176
35.2941
hfeng-pmm3SNP*map_l250_m2_e1homalt
99.4855
99.5953
99.3759
87.8906
2707112707176
35.2941
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6606
99.5951
97.7434
43.6301
5658235631130122
93.8462
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.5405
99.5949
99.4862
63.6798
1106345110375716
28.0702
hfeng-pmm3SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7825
99.5948
99.9709
62.1467
344114344111
100.0000
eyeh-varpipeSNPtvmap_l125_m0_e0homalt
99.6613
99.5948
99.7279
75.3135
22129219962
33.3333
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7825
99.5948
99.9709
63.5497
344114344111
100.0000
hfeng-pmm3SNP*map_l100_m2_e1*
99.6666
99.5946
99.7387
65.1913
744343037442319531
15.8974
egarrison-hhgaSNPtvmap_l150_m1_e0homalt
99.7589
99.5945
99.9237
71.1191
393016393033
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6468
99.5944
99.6992
79.9741
66302766282011
55.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6954
99.5943
99.7967
58.4810
491249110
0.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6954
99.5943
99.7967
57.4026
491249110
0.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4934
99.5943
99.3927
58.8676
491249130
0.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5943
99.5943
99.5943
58.4317
491249120
0.0000
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6954
99.5943
99.7967
57.2917
491249110
0.0000
gduggal-bwafbSNPtiHG002compoundhethomalt
99.3188
99.5943
99.0449
33.6250
73643073637158
81.6901
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6954
99.5943
99.7967
54.9038
491249110
0.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4934
99.5943
99.3927
55.2131
491249130
0.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6954
99.5943
99.7967
58.4810
491249110
0.0000
hfeng-pmm3SNP*map_l250_m1_e0homalt
99.4527
99.5940
99.3117
86.9423
2453102453176
35.2941