PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 234 235 236 237 238 239 240 241 242 ... 1720 1721 » 11851-11900 / 86044 show all
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6717	99.6061	99.7373	45.9408	2276	9	2278	6	3	50.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7372	99.6061	99.8685	48.0892	2276	9	2279	3	0	0.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6929	99.6061	99.7799	36.0694	2276	9	2720	6	4	66.6667
ndellapenna-hhga	SNP	ti	segdup	*	99.5651	99.6059	99.5244	88.6856	19460	77	19460	93	33	35.4839
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.7765	99.6055	96.0134	48.3178	8333	33	8333	346	344	99.4220
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	86.9634	99.6055	77.1689	87.2477	505	2	507	150	85	56.6667
hfeng-pmm3	SNP	ti	map_l250_m2_e1	homalt	99.5488	99.6050	99.4927	87.7689	1765	7	1765	9	2	22.2222
hfeng-pmm2	SNP	ti	map_l250_m2_e1	homalt	99.5488	99.6050	99.4927	87.8092	1765	7	1765	9	2	22.2222
jlack-gatk	SNP	*	HG002compoundhet	het	99.3003	99.6050	98.9974	47.5779	14122	56	14120	143	30	20.9790
bgallagher-sentieon	INDEL	D1_5	map_siren	het	99.1706	99.6047	98.7402	81.3769	2268	9	2273	29	2	6.8966
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	*	99.3603	99.6045	99.1174	68.4796	24934	99	24930	222	31	13.9640
hfeng-pmm3	SNP	tv	map_l100_m2_e1	*	99.6458	99.6045	99.6872	66.3290	25183	100	25179	79	10	12.6582
hfeng-pmm2	SNP	tv	map_l100_m2_e1	*	99.4903	99.6045	99.3764	68.9155	25183	100	25179	158	17	10.7595
dgrover-gatk	INDEL	I1_5	HG002complexvar	*	99.7285	99.6044	99.8530	57.2674	33231	132	33279	49	38	77.5510
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5198	99.6042	99.4355	71.4918	3523	14	3523	20	20	100.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4122	99.6041	99.2209	44.4011	10316	41	10316	81	79	97.5309
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8869	99.6041	98.1799	38.4191	10316	41	10303	191	187	97.9058
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7732	99.6038	99.9432	60.7007	1760	7	1760	1	1	100.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7450	99.6038	99.8865	61.3427	1760	7	1760	2	2	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7732	99.6038	99.9432	61.2967	1760	7	1760	1	1	100.0000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4723	99.6037	99.3412	88.4492	1508	6	1508	10	9	90.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.5051	99.6037	99.4067	88.7962	1508	6	1508	9	9	100.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2751	99.6037	98.9488	87.5654	1508	6	1506	16	13	81.2500
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7605	99.6030	99.9185	55.4188	11040	44	11040	9	6	66.6667
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5527	99.6020	99.5035	66.4780	1001	4	1002	5	3	60.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.6387	99.6019	99.6756	81.2035	10758	43	10754	35	19	54.2857
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7867	99.6017	99.9723	54.3769	25258	101	25260	7	3	42.8571
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.0553	99.6017	96.5562	49.9027	3751	15	3729	133	130	97.7444
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.0553	99.6017	96.5562	49.9027	3751	15	3729	133	130	97.7444
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7571	99.6017	99.9130	55.8468	25258	101	25261	22	14	63.6364
raldana-dualsentieon	SNP	ti	map_l125_m1_e0	homalt	99.7597	99.6016	99.9183	62.2389	11001	44	11001	9	8	88.8889
ltrigg-rtg1	SNP	ti	map_l125_m1_e0	homalt	99.7461	99.6016	99.8910	65.4505	11001	44	11001	12	12	100.0000
egarrison-hhga	SNP	tv	segdup	*	99.5315	99.6015	99.4616	90.4428	8498	34	8498	46	15	32.6087
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8002	99.6012	100.0000	36.4268	2747	11	2747	0	0
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7763	99.6011	99.9520	41.2692	6243	25	6253	3	3	100.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3244	99.6011	95.1494	59.1637	3995	16	3884	198	12	6.0606
hfeng-pmm2	SNP	tv	map_l100_m2_e0	*	99.4872	99.6005	99.3742	68.8945	24933	100	24929	157	17	10.8280
hfeng-pmm3	SNP	tv	map_l100_m2_e0	*	99.6443	99.6005	99.6881	66.3015	24933	100	24929	78	10	12.8205
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7332	99.6004	99.8664	53.4604	2243	9	2243	3	1	33.3333
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7998	99.6004	100.0000	54.6227	2243	9	2243	0	0
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5782	99.6004	99.5561	52.7078	2243	9	2243	10	0	0.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5497	99.6000	99.4995	76.1480	2988	12	2982	15	4	26.6667
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5663	99.6000	99.5327	76.7518	2988	12	2982	14	4	28.5714
hfeng-pmm3	SNP	ti	map_l250_m2_e0	homalt	99.5429	99.5998	99.4860	87.7295	1742	7	1742	9	2	22.2222
hfeng-pmm2	SNP	ti	map_l250_m2_e0	homalt	99.5429	99.5998	99.4860	87.7706	1742	7	1742	9	2	22.2222
rpoplin-dv42	SNP	tv	map_siren	homalt	99.7328	99.5998	99.8662	55.9755	17171	69	17169	23	21	91.3043
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge