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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 232 233 234 235 236 237 238 239 240 ... 1720 1721 » 11751-11800 / 86044 show all
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.9533	99.6209	96.3407	45.9172	3153	12	3133	119	118	99.1597
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6778	99.6209	99.7347	74.4322	33110	126	33088	88	54	61.3636
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.7712	99.6205	94.0803	83.0466	525	2	445	28	26	92.8571
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.7778	99.6205	94.0928	82.7887	525	2	446	28	25	89.2857
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.7712	99.6205	94.0803	83.0466	525	2	445	28	26	92.8571
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2117	99.6203	98.8065	58.3355	1574	6	1573	19	1	5.2632
ltrigg-rtg2	SNP	tv	map_l150_m1_e0	homalt	99.7842	99.6199	99.9492	67.6001	3931	15	3932	2	1	50.0000
dgrover-gatk	SNP	*	map_siren	het	99.5699	99.6197	99.5201	59.7603	90645	346	90631	437	77	17.6201
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.3737	523	2	523	0	0
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6190	99.7143	62.5668	1046	4	1047	3	3	100.0000
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.6961	523	2	523	0	0
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	69.3435	523	2	523	0	0
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6190	99.6190	99.6190	68.6754	523	2	523	2	1	50.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.6161	523	2	523	0	0
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	63.7883	523	2	520	0	0
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.4953	523	2	523	0	0
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5100	99.6190	99.4012	66.6667	523	2	498	3	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7614	99.6188	99.9044	71.9607	3136	12	3136	3	3	100.0000
ltrigg-rtg1	SNP	*	segdup	*	99.0787	99.6188	98.5445	88.0967	27960	107	27963	413	51	12.3487
ltrigg-rtg1	SNP	*	map_l150_m1_e0	homalt	99.7513	99.6186	99.8844	70.3814	11230	43	11232	13	13	100.0000
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.3434	99.6186	97.1004	38.0755	1306	5	1306	39	35	89.7436
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.6961	99.6184	97.7906	64.7616	3916	15	3895	88	3	3.4091
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4917	99.6183	99.3655	63.7701	783	3	783	5	3	60.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	66.9401	522	2	522	2	1	50.0000
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	63.0465	522	2	522	2	1	50.0000
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	64.2271	522	2	522	1	1	100.0000
jpowers-varprowl	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.3100	99.6183	93.2143	76.1499	522	2	522	38	20	52.6316
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	64.2221	522	2	522	0	0
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7452	99.6183	99.8724	62.7730	783	3	783	1	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	66.4313	522	2	522	1	1	100.0000
hfeng-pmm2	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	69.2308	522	2	522	2	1	50.0000
jlack-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	63.4198	522	2	522	0	0
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	92.8275	99.6183	86.9034	74.4470	783	3	783	118	3	2.5424
ghariani-varprowl	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.2067	99.6183	94.9091	73.8841	522	2	522	28	19	67.8571
cchapple-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7125	99.6183	99.8069	55.4600	522	2	517	1	1	100.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7314	99.6182	99.8449	68.2587	9655	37	9655	15	13	86.6667
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3788	99.6180	99.1407	38.1189	10691	41	10730	93	1	1.0753
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4096	99.6175	99.2025	47.1436	8334	32	8334	67	66	98.5075
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7400	99.6173	99.8629	52.8317	3644	14	3643	5	1	20.0000
egarrison-hhga	SNP	*	HG002complexvar	het	99.7873	99.6172	99.9580	18.3902	463715	1782	463738	195	79	40.5128
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.2945	99.6172	97.0064	59.6494	8328	32	8328	257	256	99.6109
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.2945	99.6172	97.0064	59.6494	8328	32	8328	257	256	99.6109
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7825	99.6169	99.9487	75.9091	3900	15	3900	2	2	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7953	99.6169	99.9744	76.0807	3900	15	3900	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7436	99.6160	99.8716	27.5888	3891	15	3890	5	1	20.0000
raldana-dualsentieon	SNP	ti	map_l125_m2_e1	homalt	99.7684	99.6160	99.9212	64.9891	11414	44	11414	9	8	88.8889
ltrigg-rtg1	SNP	ti	map_l125_m2_e1	homalt	99.7553	99.6160	99.8950	68.0185	11414	44	11415	12	12	100.0000
hfeng-pmm3	SNP	tv	map_siren	het	99.6834	99.6155	99.7514	57.1444	28499	110	28494	71	7	9.8592
asubramanian-gatk	SNP	*	func_cds	het	99.5968	99.6147	99.5789	34.4684	11118	43	11115	47	1	2.1277
eyeh-varpipe	SNP	ti	map_l150_m1_e0	*	99.1809	99.6144	98.7511	77.4196	19636	76	19293	244	16	6.5574

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