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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 231 232 233 234 235 236 237 238 239 ... 1720 1721 » 11701-11750 / 86044 show all
ltrigg-rtg1	SNP	*	map_l150_m2_e1	homalt	99.7587	99.6280	99.8898	72.7027	11783	44	11789	13	13	100.0000
eyeh-varpipe	SNP	ti	map_l100_m0_e0	*	99.1630	99.6279	98.7023	71.7657	21690	81	21373	281	15	5.3381
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7826	99.6279	99.9378	69.6768	4819	18	4819	3	3	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
hfeng-pmm2	SNP	*	map_l250_m2_e0	homalt	99.4980	99.6277	99.3687	87.8966	2676	10	2676	17	6	35.2941
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.4831	99.6276	89.8438	81.7577	2408	9	2415	273	131	47.9853
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.4729	99.6276	91.6509	80.5506	2408	9	2415	220	130	59.0909
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.6955	99.6275	95.8371	67.9253	4279	16	4282	186	9	4.8387
egarrison-hhga	SNP	*	map_l150_m1_e0	homalt	99.7690	99.6274	99.9110	70.9129	11231	42	11231	10	10	100.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	84.1727	99.6274	72.8688	27.5370	7220	27	7394	2753	2746	99.7457
raldana-dualsentieon	SNP	*	map_l125_m1_e0	homalt	99.7690	99.6273	99.9110	62.5841	16842	63	16842	15	11	73.3333
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8080	99.6266	99.9901	51.1176	10140	38	10103	1	1	100.0000
ghariani-varprowl	SNP	*	HG002complexvar	het	99.2312	99.6262	98.8393	22.3346	463752	1740	464023	5449	138	2.5326
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2263	99.6260	98.8298	49.0498	3996	15	4054	48	0	0.0000
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.6794	99.6260	97.7506	58.4645	3996	15	3998	92	11	11.9565
gduggal-snapfb	SNP	ti	HG002complexvar	*	99.2700	99.6259	98.9167	19.8956	506535	1902	507043	5553	819	14.7488
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.3944	99.6258	99.1640	40.2940	2130	8	2135	18	5	27.7778
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1022	99.6257	98.5842	64.7104	18098	68	18104	260	243	93.4615
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1022	99.6257	98.5842	64.7104	18098	68	18104	260	243	93.4615
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8684	99.6256	98.1226	58.6142	11441	43	11446	219	209	95.4338
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4393	99.6255	99.2537	63.5870	266	1	266	2	2	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4393	99.6255	99.2537	64.1232	266	1	266	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4393	99.6255	99.2537	63.8327	266	1	266	2	2	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7531	99.6254	99.8811	52.9851	25264	95	25209	30	21	70.0000
eyeh-varpipe	SNP	ti	map_l150_m2_e0	*	99.1763	99.6246	98.7319	78.7456	20435	77	20088	258	16	6.2016
ltrigg-rtg2	SNP	tv	map_l125_m1_e0	homalt	99.7778	99.6246	99.9315	63.2977	5838	22	5839	4	3	75.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e0	het	99.0330	99.6245	98.4486	71.1792	30507	115	29825	470	19	4.0426
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4843	99.6244	99.3446	67.0980	1061	4	1061	7	7	100.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3995	99.6241	99.1760	40.3752	1325	5	1324	11	11	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8117	99.6241	100.0000	33.6853	1325	5	1319	0	0
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.8296	265	1	265	2	1	50.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.2473	265	1	265	2	1	50.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.1405	265	1	265	2	1	50.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.1762	265	1	265	2	1	50.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1381	99.6239	98.6571	45.3917	11390	43	11387	155	1	0.6452
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7175	99.6237	99.8115	81.3892	1059	4	1059	2	2	100.0000
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7942	99.6237	99.9652	56.3615	20123	76	20123	7	7	100.0000
jmaeng-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.3427	99.6234	99.0637	82.1345	529	2	529	5	4	80.0000
eyeh-varpipe	SNP	tv	map_l125_m0_e0	*	96.4575	99.6230	93.4869	79.0795	6606	25	6574	458	11	2.4018
ltrigg-rtg1	INDEL	I1_5	*	homalt	99.7620	99.6227	99.9017	50.6392	60199	228	59978	59	47	79.6610
eyeh-varpipe	SNP	ti	map_l100_m1_e0	het	99.0514	99.6226	98.4868	69.7302	29829	113	29158	448	19	4.2411
asubramanian-gatk	INDEL	D1_5	HG002complexvar	homalt	99.7403	99.6226	99.8582	60.0860	10558	40	10565	15	13	86.6667
jmaeng-gatk	SNP	*	*	het	99.6262	99.6225	99.6299	27.1537	1866514	7073	1866391	6934	179	2.5815
eyeh-varpipe	SNP	*	map_l125_m2_e1	het	98.1785	99.6221	96.7760	76.7928	29528	112	28607	953	28	2.9381
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.5465	99.6219	99.4711	83.1776	2635	10	2633	14	8	57.1429
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.3617	99.6215	99.1032	69.4732	45529	173	45529	412	31	7.5243
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.3617	99.6215	99.1032	69.4732	45529	173	45529	412	31	7.5243
hfeng-pmm1	SNP	ti	map_l125_m0_e0	homalt	99.6547	99.6215	99.6881	70.0040	4474	17	4474	14	5	35.7143
eyeh-varpipe	SNP	*	map_l125_m2_e0	het	98.1728	99.6214	96.7658	76.7357	29207	111	28304	946	28	2.9598

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