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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 230 231 232 233 234 235 236 237 238 ... 1720 1721 » 11651-11700 / 86044 show all
qzeng-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6297	99.6336	99.6257	58.2037	20125	74	19963	75	44	58.6667
mlin-fermikit	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.9682	99.6336	96.3576	67.1524	10060	37	10079	381	340	89.2388
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8118	99.6334	99.9908	59.9447	10871	40	10868	1	0	0.0000
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2467	99.6334	98.8630	62.3274	10871	40	10869	125	24	19.2000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5329	99.6333	99.4326	76.3741	2989	11	2979	17	2	11.7647
cchapple-custom	SNP	tv	HG002complexvar	homalt	99.8120	99.6331	99.9915	20.8601	94762	349	94159	8	7	87.5000
ltrigg-rtg2	SNP	tv	map_l150_m2_e0	homalt	99.7915	99.6326	99.9509	70.3193	4068	15	4069	2	1	50.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5480	99.6325	99.4637	71.3697	3524	13	3524	19	19	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7250	99.6324	97.8339	67.7720	1084	4	1084	24	21	87.5000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7250	99.6324	97.8339	67.7720	1084	4	1084	24	21	87.5000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8600	99.6324	98.0995	67.6806	1084	4	1084	21	19	90.4762
ltrigg-rtg1	SNP	*	map_l150_m2_e0	homalt	99.7604	99.6324	99.8886	72.6706	11656	43	11658	13	13	100.0000
hfeng-pmm2	SNP	*	map_l250_m2_e1	homalt	99.5040	99.6321	99.3761	87.9531	2708	10	2708	17	6	35.2941
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.7177	99.6321	99.8035	42.5670	4062	15	4064	8	5	62.5000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6549	99.6320	99.6779	64.1892	2166	8	2166	7	0	0.0000
raldana-dualsentieon	SNP	*	map_l125_m2_e0	homalt	99.7723	99.6317	99.9134	65.2834	17311	64	17311	15	11	73.3333
hfeng-pmm2	INDEL	I6_15	*	homalt	98.0364	99.6314	96.4918	51.1007	6216	23	6216	226	223	98.6726
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7876	99.6312	99.9445	71.5069	5403	20	5403	3	3	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7876	99.6312	99.9445	71.5069	5403	20	5403	3	3	100.0000
jli-custom	SNP	tv	map_l100_m2_e0	homalt	99.7826	99.6310	99.9347	60.9754	9180	34	9180	6	5	83.3333
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	97.7598	99.6310	95.9575	59.6872	2430	9	2350	99	7	7.0707
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.0012	99.6310	98.3793	56.8305	2430	9	2428	40	7	17.5000
ltrigg-rtg1	SNP	*	map_l100_m0_e0	homalt	99.7372	99.6299	99.8447	62.2918	11577	43	11575	18	15	83.3333
egarrison-hhga	SNP	*	map_l100_m0_e0	homalt	99.7759	99.6299	99.9223	61.7548	11577	43	11577	9	8	88.8889
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	63.3242	269	1	267	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	64.7757	269	1	267	0	0
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	63.2231	269	1	267	0	0
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4427	99.6296	99.2565	62.6389	269	1	267	2	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6282	99.6296	99.6269	64.6904	269	1	267	1	0	0.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	55.7214	269	1	267	0	0
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	64.6358	269	1	267	0	0
jmaeng-gatk	INDEL	I1_5	map_l100_m2_e1	homalt	99.3536	99.6296	99.0792	82.1733	538	2	538	5	4	80.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4427	99.6296	99.2565	60.1481	269	1	267	2	2	100.0000
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6500	99.6294	99.6706	40.2309	6720	25	6656	22	11	50.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7995	99.6294	99.9702	32.6604	6720	25	6703	2	1	50.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6909	99.6293	99.7526	66.9619	4838	18	4838	12	9	75.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6909	99.6293	99.7526	66.4708	4838	18	4838	12	8	66.6667
ckim-dragen	INDEL	D1_5	HG002complexvar	het	99.7370	99.6292	99.8451	55.8027	20688	77	20632	32	11	34.3750
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7905	99.6289	99.9527	66.4771	16912	63	16912	8	7	87.5000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7905	99.6289	99.9527	66.4771	16912	63	16912	8	7	87.5000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333
egarrison-hhga	SNP	tv	HG002complexvar	*	99.7884	99.6287	99.9487	21.8626	245238	914	245267	126	78	61.9048
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7775	99.6287	99.9267	58.5881	16368	61	16366	12	1	8.3333
eyeh-varpipe	SNP	ti	map_l100_m2_e1	het	99.0385	99.6286	98.4553	71.2000	30845	115	30148	473	19	4.0169
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7343	99.6285	99.8404	58.9273	28155	105	28158	45	20	44.4444
eyeh-varpipe	SNP	ti	map_l150_m2_e1	*	99.1748	99.6284	98.7252	78.8203	20646	77	20291	262	16	6.1069
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.5913	99.6283	91.8687	63.3516	3752	14	3751	332	329	99.0964
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.5913	99.6283	91.8687	63.3516	3752	14	3751	332	329	99.0964
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4268	99.6283	99.2261	57.2682	2948	11	2949	23	1	4.3478

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