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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 228 229 230 231 232 233 234 235 236 ... 1720 1721 » 11551-11600 / 86044 show all
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6716	99.6463	99.6968	50.6032	11833	42	11838	36	19	52.7778
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6120	99.6463	99.5777	54.2814	10142	36	10139	43	40	93.0233
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7238	99.6461	99.8015	61.5050	28160	100	28162	56	44	78.5714
gduggal-snapfb	SNP	tv	HG002complexvar	homalt	99.3543	99.6457	99.0647	24.8993	94774	337	94793	895	159	17.7654
raldana-dualsentieon	INDEL	D16_PLUS	*	homalt	99.2348	99.6454	98.8277	68.4541	1686	6	1686	20	16	80.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.5727	1124	4	1124	1	1	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2056	99.6454	98.7698	73.1350	562	2	562	7	7	100.0000
jmaeng-gatk	INDEL	D16_PLUS	*	homalt	99.0018	99.6454	98.3664	70.1757	1686	6	1686	28	20	71.4286
bgallagher-sentieon	INDEL	D16_PLUS	*	homalt	98.7698	99.6454	97.9094	70.3716	1686	6	1686	36	27	75.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.4847	1124	4	1124	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8224	99.6454	100.0000	42.4180	1124	4	1124	0	0
dgrover-gatk	INDEL	D16_PLUS	*	homalt	98.8856	99.6454	98.1374	70.5317	1686	6	1686	32	23	71.8750
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.6020	1124	4	1124	1	1	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5965	99.6454	97.5694	72.5584	562	2	562	14	13	92.8571
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7338	99.6454	99.8224	41.5672	1124	4	1124	2	2	100.0000
hfeng-pmm3	SNP	tv	map_l150_m1_e0	homalt	99.6705	99.6452	99.6957	71.7215	3932	14	3932	12	4	33.3333
egarrison-hhga	SNP	ti	map_l150_m1_e0	homalt	99.7745	99.6451	99.9042	70.8007	7301	26	7301	7	7	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	homalt	99.7799	99.6449	99.9152	73.3597	11785	42	11785	10	10	100.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6448	99.6448	99.6448	54.2090	2244	8	2244	8	6	75.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8221	99.6448	100.0000	51.7603	2244	8	2302	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8220	99.6445	100.0000	64.1135	1682	6	1682	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7923	99.6445	99.9406	65.1625	1682	6	1682	1	1	100.0000
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.4666	99.6442	97.3165	63.6796	6162	22	6165	170	16	9.4118
bgallagher-sentieon	INDEL	*	*	het	99.5620	99.6441	99.4801	60.4341	193442	691	193072	1009	623	61.7443
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7789	99.6438	99.9143	60.0480	6994	25	6992	6	3	50.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6438	99.6438	99.6438	69.4439	3077	11	3077	11	8	72.7273
ghariani-varprowl	SNP	*	segdup	*	97.8779	99.6437	96.1737	92.2561	27967	100	27975	1113	70	6.2893
hfeng-pmm3	SNP	ti	map_l125_m0_e0	homalt	99.6659	99.6437	99.6881	69.8765	4475	16	4475	14	5	35.7143
hfeng-pmm1	SNP	*	HG002complexvar	het	99.8138	99.6436	99.9845	18.0286	463838	1659	463708	72	19	26.3889
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.8007	99.6434	96.0249	44.6210	2794	10	2778	115	115	100.0000
hfeng-pmm2	SNP	*	HG002complexvar	het	99.8103	99.6430	99.9782	18.0375	463835	1662	463706	101	15	14.8515
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.3560	99.6428	97.1020	45.5337	10320	37	10320	308	303	98.3766
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7891	99.6426	99.9361	57.3259	28159	101	28161	18	11	61.1111
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3937	99.6425	99.1462	42.0410	18118	65	18115	156	2	1.2821
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8081	99.6424	99.9744	76.1009	3901	14	3901	1	1	100.0000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7826	99.6424	99.9232	75.5082	3901	14	3901	3	2	66.6667
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5829	99.6423	99.5235	65.6204	27579	99	27569	132	13	9.8485
jmaeng-gatk	SNP	ti	*	het	99.6655	99.6418	99.6893	25.0371	1277299	4592	1277249	3981	127	3.1902
ltrigg-rtg1	SNP	ti	segdup	*	99.1266	99.6417	98.6169	87.5468	19467	70	19465	273	31	11.3553
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7565	99.6416	99.8717	29.3435	3892	14	3891	5	1	20.0000
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	96.6308	99.6416	93.7966	43.2141	3892	14	3901	258	11	4.2636
rpoplin-dv42	INDEL	D1_5	HG002complexvar	homalt	99.7026	99.6414	99.7639	58.4249	10560	38	10565	25	23	92.0000
cchapple-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2564	99.6414	98.8744	60.9154	35292	127	35487	404	50	12.3762
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7100	99.6412	99.7789	75.9521	3610	13	3610	8	3	37.5000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7375	99.6412	99.8341	75.9622	3610	13	3610	6	3	50.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9561	99.6411	98.2804	53.4169	8330	30	8287	145	135	93.1034
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9561	99.6411	98.2804	53.4169	8330	30	8287	145	135	93.1034
egarrison-hhga	SNP	*	map_l150_m2_e0	homalt	99.7775	99.6410	99.9143	73.3265	11657	42	11657	10	10	100.0000
dgrover-gatk	SNP	*	map_siren	*	99.6607	99.6410	99.6805	56.6949	145703	525	145680	467	103	22.0557
dgrover-gatk	SNP	tv	map_siren	*	99.6255	99.6408	99.6103	59.7727	45765	165	45757	179	35	19.5531

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