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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 227 228 229 230 231 232 233 234 235 ... 1720 1721 » 11501-11550 / 86044 show all
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5949	99.6524	99.5376	63.4713	860	3	861	4	3	75.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5374	99.6524	99.4226	63.8866	860	3	861	5	2	40.0000
eyeh-varpipe	SNP	ti	map_l125_m1_e0	*	99.2923	99.6523	98.9350	73.2001	29233	102	28704	309	21	6.7961
dgrover-gatk	SNP	*	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	22.7518	859	3	859	0	0
dgrover-gatk	SNP	tv	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	22.7518	859	3	859	0	0
dgrover-gatk	SNP	tv	map_siren	homalt	99.7938	99.6520	99.9360	53.0780	17180	60	17177	11	9	81.8182
ltrigg-rtg1	SNP	*	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	21.3175	859	3	860	0	0
ltrigg-rtg1	SNP	tv	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	21.3175	859	3	860	0	0
cchapple-custom	SNP	*	HG002compoundhet	hetalt	0.0000	99.6520	0.0000	0.0000	859	3	0	0	0
cchapple-custom	SNP	tv	HG002compoundhet	hetalt	0.0000	99.6520	0.0000	0.0000	859	3	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7843	99.6517	99.9173	61.4911	10873	38	10869	9	5	55.5556
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.6367	99.6517	93.7987	63.9277	11444	40	11435	756	746	98.6772
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.5932	99.6513	99.5352	81.3843	6859	24	6853	32	18	56.2500
ndellapenna-hhga	SNP	*	map_l100_m2_e0	homalt	99.7835	99.6512	99.9162	62.4810	27427	96	27427	23	21	91.3043
jli-custom	SNP	*	map_l100_m2_e0	homalt	99.7944	99.6512	99.9381	59.7123	27427	96	27427	17	16	94.1176
jli-custom	SNP	*	map_l100_m2_e1	homalt	99.7946	99.6510	99.9387	59.6958	27699	97	27699	17	16	94.1176
ltrigg-rtg1	SNP	*	map_l125_m1_e0	homalt	99.7779	99.6510	99.9051	65.6341	16846	59	16847	16	16	100.0000
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2980	99.6507	98.9479	58.0370	17117	60	17116	182	35	19.2308
cchapple-custom	SNP	tv	HG002complexvar	*	99.7805	99.6506	99.9108	21.2813	245292	860	244113	218	153	70.1835
jlack-gatk	INDEL	D1_5	*	het	99.1283	99.6506	98.6115	59.9642	87268	306	87281	1229	246	20.0163
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7298	99.6506	99.8091	71.0989	3137	11	3137	6	4	66.6667
rpoplin-dv42	INDEL	D1_5	*	homalt	99.7606	99.6505	99.8710	59.0122	48755	171	48760	63	56	88.8889
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6503	99.6503	99.6503	49.2608	855	3	855	3	3	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8249	99.6503	100.0000	45.9813	855	3	867	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8249	99.6503	100.0000	48.5869	855	3	855	0	0
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.5150	99.6497	95.4698	67.0354	569	2	569	27	27	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5281	99.6497	97.4315	67.4470	569	2	569	15	15	100.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8061	99.6496	99.9630	75.1151	5404	19	5404	2	1	50.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8061	99.6496	99.9630	75.1151	5404	19	5404	2	1	50.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7545	99.6496	99.8596	26.6735	1422	5	1422	2	2	100.0000
ciseli-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.6881	99.6496	95.8023	36.3088	1422	5	1415	62	31	50.0000
cchapple-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6177	99.6495	99.5860	52.1198	27861	98	27903	116	33	28.4483
hfeng-pmm3	SNP	tv	map_l250_m1_e0	homalt	99.3593	99.6495	99.0708	87.1531	853	3	853	8	4	50.0000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1274	99.6491	98.6111	54.0914	852	3	852	12	0	0.0000
raldana-dualsentieon	SNP	*	HG002complexvar	het	99.8134	99.6490	99.9784	18.1564	463863	1634	463733	100	18	18.0000
eyeh-varpipe	SNP	tv	map_l150_m0_e0	het	93.9083	99.6483	88.7937	84.1222	2833	10	2797	353	7	1.9830
bgallagher-sentieon	SNP	*	map_siren	het	99.4455	99.6483	99.2436	58.2943	90671	320	90657	691	77	11.1433
ndellapenna-hhga	SNP	*	map_l100_m1_e0	homalt	99.7849	99.6482	99.9220	59.8338	26908	95	26908	21	19	90.4762
jli-custom	SNP	*	map_l100_m1_e0	homalt	99.7923	99.6482	99.9369	57.0814	26908	95	26908	17	16	94.1176
jmaeng-gatk	SNP	tv	func_cds	homalt	99.8236	99.6479	100.0000	26.0775	1698	6	1698	0	0
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8000	99.6479	99.9525	54.9426	14718	52	14720	7	1	14.2857
ckim-gatk	SNP	tv	func_cds	homalt	99.8236	99.6479	100.0000	25.7867	1698	6	1698	0	0
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.4721	99.6475	99.2974	88.2757	848	3	848	6	5	83.3333
jlack-gatk	INDEL	I6_15	*	homalt	95.8674	99.6474	92.3637	53.5505	6217	22	6217	514	507	98.6381
ndellapenna-hhga	SNP	*	HG002complexvar	*	99.7910	99.6474	99.9350	18.9550	751721	2660	751769	489	351	71.7791
asubramanian-gatk	SNP	ti	func_cds	het	99.6530	99.6472	99.6589	31.5760	8474	30	8472	29	1	3.4483
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7112	99.6472	99.7752	70.6918	6214	22	6214	14	12	85.7143
eyeh-varpipe	SNP	*	map_l150_m1_e0	*	98.5692	99.6472	97.5143	77.5222	30501	108	29619	755	30	3.9735
eyeh-varpipe	SNP	*	map_l100_m0_e0	*	98.1181	99.6468	96.6356	72.2026	32725	116	31854	1109	29	2.6150
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6397	99.6465	99.6329	33.8966	7329	26	7327	27	8	29.6296

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