PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11451-11500 / 86044 show all
hfeng-pmm1SNPti*hetalt
99.5708
99.6564
99.4854
47.7130
580258033
100.0000
hfeng-pmm2SNPti*hetalt
99.8279
99.6564
100.0000
47.9821
580258000
jlack-gatkINDELD1_5HG002compoundhethomalt
69.2124
99.6564
53.0165
77.8632
2901290257257
100.0000
hfeng-pmm3SNPti*hetalt
99.7420
99.6564
99.8279
45.8022
580258011
100.0000
jli-customINDELD1_5HG002compoundhethomalt
86.9565
99.6564
77.1277
84.9600
29012908684
97.6744
ckim-gatkSNP**het
99.6800
99.6561
99.7039
26.8036
1867144644318670215544194
3.4993
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7100
99.6561
99.7639
53.8981
1014335101412424
100.0000
dgrover-gatkINDEL**het
99.5990
99.6559
99.5422
61.2168
193465668193091888555
62.5000
dgrover-gatkSNP**hetalt
99.8275
99.6556
100.0000
41.6667
868386800
dgrover-gatkSNPtv*hetalt
99.8275
99.6556
100.0000
41.6667
868386800
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8275
99.6556
100.0000
44.5296
405114405100
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7906
99.6556
99.9260
45.0901
405114405131
33.3333
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7906
99.6556
99.9260
49.2362
405114405131
33.3333
cchapple-customSNP**hetalt
0.0000
99.6556
0.0000
0.0000
8683000
cchapple-customSNPtv*hetalt
0.0000
99.6556
0.0000
0.0000
8683000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7660
99.6556
99.8767
49.4516
405114405151
20.0000
ltrigg-rtg1SNP**hetalt
99.2007
99.6556
98.7500
40.5405
86838691111
100.0000
ltrigg-rtg1SNPtv*hetalt
99.2007
99.6556
98.7500
40.5405
86838691111
100.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
98.7332
99.6556
97.8277
50.1744
4051144053900
0.0000
gduggal-snapfbSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.2893
99.6556
98.9258
48.4715
4051144052445
11.3636
jli-customSNPtimap_l100_m1_e0homalt
99.7965
99.6548
99.9386
56.4067
1789862178981111
100.0000
jli-customSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
raldana-dualsentieonSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
21.4966
577257700
ndellapenna-hhgaSNP*map_l100_m2_e1homalt
99.7857
99.6546
99.9170
62.4746
2770096277002321
91.3043
dgrover-gatkSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.2372
577257700
hfeng-pmm1SNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.5503
577257700
hfeng-pmm3SNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
hfeng-pmm2SNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.7577
577257700
astatham-gatkSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
21.9215
577257700
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8016
99.6534
99.9503
52.1900
201297020107103
30.0000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7686
99.6532
99.8842
35.8231
17246172522
100.0000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7077
99.6531
99.7624
58.0995
1637257163733928
71.7949
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7394
99.6528
99.8261
68.9860
574257411
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5146
99.6528
99.3767
68.2498
14355143590
0.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6528
99.6528
99.6528
69.7320
574257422
100.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
98.5924
99.6528
97.5543
73.9929
143551436363
8.3333
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7394
99.6528
99.8261
70.1454
574257411
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7394
99.6528
99.8261
69.1854
574257411
100.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7394
99.6528
99.8261
66.3743
574257411
100.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5663
99.6528
99.4801
69.4386
574257431
33.3333
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7394
99.6528
99.8261
70.1454
574257411
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8116
99.6527
99.9710
62.5408
344312344311
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7826
99.6527
99.9129
62.6693
344312344333
100.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8260
99.6527
100.0000
62.8065
344312344300
jli-customSNPtvHG002compoundhet*
99.6414
99.6526
99.6301
48.9851
88923188893314
42.4242
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6526
99.6524
99.6528
63.6057
860386132
66.6667
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5374
99.6524
99.4226
64.3621
860386153
60.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5931
99.6524
99.5338
59.0453
860385443
75.0000