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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11351-11400 / 86044 show all
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7565
99.6672
99.8461
33.6736
389313389262
33.3333
bgallagher-sentieonSNPtimap_l100_m2_e0homalt
99.7949
99.6668
99.9233
59.4718
1824861182481412
85.7143
asubramanian-gatkINDELD1_5*homalt
99.6476
99.6668
99.6283
62.3701
4876316348779182169
92.8571
bgallagher-sentieonSNPtvmap_l100_m2_e1homalt
99.7847
99.6667
99.9030
61.6624
927131927196
66.6667
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7995
99.6662
99.9331
79.6097
14935149311
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7995
99.6662
99.9331
80.2093
14935149310
0.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8328
99.6662
100.0000
79.7916
14935149300
bgallagher-sentieonINDELI1_5*het
99.6628
99.6660
99.6596
60.0640
7877726478760269153
56.8773
bgallagher-sentieonSNPtimap_l100_m1_e0homalt
99.7937
99.6659
99.9218
56.9365
1790060179001412
85.7143
ndellapenna-hhgaSNPtimap_l100_m1_e0homalt
99.7965
99.6659
99.9274
59.1233
1790060179001313
100.0000
eyeh-varpipeSNP*map_l100_m2_e0het
97.9986
99.6659
96.3860
71.4860
4624415544753167834
2.0262
bgallagher-sentieonSNP*map_l100_m2_e0homalt
99.7908
99.6657
99.9162
60.2352
2743192274312318
78.2609
egarrison-hhgaSNPtimap_l100_m0_e0homalt
99.8003
99.6656
99.9355
61.1047
774826774855
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7811
99.6656
99.8969
59.9463
387413387444
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7425
99.6656
99.8196
59.9732
387413387476
85.7143
bgallagher-sentieonSNP*map_l100_m2_e1homalt
99.7911
99.6654
99.9170
60.2187
2770393277032318
78.2609
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4573
99.6653
99.2501
46.8795
83382883386360
95.2381
rpoplin-dv42SNP*segduphet
99.7082
99.6651
99.7514
90.3344
172595817253433
6.9767
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
egarrison-hhgaSNPtiHG002complexvarhet
99.8118
99.6651
99.9589
16.9554
313712105431371512951
39.5349
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.7923
99.6650
99.9200
46.9810
624721624753
60.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.7764
99.6650
99.8881
47.1210
624721624773
42.8571
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.5242
99.6649
93.5754
71.7749
2677926801849
4.8913
bgallagher-sentieonSNPtimap_l100_m2_e1homalt
99.7943
99.6648
99.9241
59.4504
1843262184321412
85.7143
dgrover-gatkINDELI1_5HG002complexvarhet
99.7798
99.6646
99.8952
58.2404
181286118108199
47.3684
hfeng-pmm2SNPtimap_siren*
99.6860
99.6642
99.7079
54.6933
10001833710000329339
13.3106
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7827
99.6639
97.9169
51.5925
9489329495202199
98.5149
bgallagher-sentieonSNPtvmap_l100_m2_e0homalt
99.7827
99.6636
99.9021
61.6697
918331918396
66.6667
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6018
99.6636
99.5400
55.7604
1125838112535241
78.8462
ltrigg-rtg1SNP*map_l125_m2_e1homalt
99.7859
99.6635
99.9086
68.1960
1747359174801616
100.0000
jli-customINDELI6_15*homalt
98.3861
99.6634
97.1411
49.1984
6218216218183180
98.3607
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5273
99.6634
99.3915
39.2247
47371647372928
96.5517
astatham-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8165
99.6633
99.9702
61.6256
10063341006333
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.7010
99.6632
99.7389
50.8366
1183540118403116
51.6129
jli-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.6872
99.6632
99.7112
69.9339
62152162151812
66.6667
bgallagher-sentieonSNP*map_l100_m1_e0homalt
99.7886
99.6630
99.9146
57.7258
2691291269122318
78.2609
cchapple-customSNPtvHG002complexvarhet
99.7615
99.6630
99.8602
21.5432
150223508149954210146
69.5238
eyeh-varpipeSNP*map_l100_m1_e0het
97.9959
99.6627
96.3839
70.0308
4520615343739164134
2.0719
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7960
99.6623
99.9299
57.3191
171195817115125
41.6667
rpoplin-dv42INDELD1_5map_l100_m1_e0homalt
99.3266
99.6622
98.9933
82.4396
590259065
83.3333
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5947
99.6620
99.5275
51.8290
2949102949141
7.1429
egarrison-hhgaSNPtimap_l150_m2_e1homalt
99.7853
99.6620
99.9088
73.2343
766726766777
100.0000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.6942
99.6620
93.8981
67.0587
29491028931886
3.1915
eyeh-varpipeSNP*map_l150_m2_e1*
98.5942
99.6616
97.5494
78.9029
321011093116878330
3.8314
ckim-gatkINDEL**het
99.4669
99.6616
99.2730
62.2737
1934766571930951414578
40.8769
jli-customSNP*HG002compoundhethet
99.6122
99.6614
99.5631
45.6634
1413048141286224
38.7097
jli-customSNPtimap_l100_m2_e0homalt
99.8004
99.6614
99.9398
59.0453
1824762182471111
100.0000
hfeng-pmm3SNPtvmap_l150_m2_e1homalt
99.6855
99.6613
99.7096
73.9141
4120144120124
33.3333
qzeng-customSNPtvfunc_cdshet
99.5488
99.6613
99.4365
40.8444
264892647150
0.0000