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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 223 224 225 226 227 228 229 230 231 ... 1720 1721 » 11301-11350 / 86044 show all
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7861	99.6723	99.9000	60.2486	6996	23	6996	7	5	71.4286
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.4011	99.6723	99.1314	60.3701	1825	6	1826	16	1	6.2500
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6723	99.9179	61.7916	18249	60	18249	15	15	100.0000
ltrigg-rtg2	SNP	*	segdup	*	99.1371	99.6722	98.6078	87.3153	27975	92	27977	395	53	13.4177
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8152	99.6720	99.9589	50.5792	2431	8	2431	1	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7674	99.6720	99.8630	53.6272	3646	12	3645	5	1	20.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7401	99.6720	99.8083	54.5545	3646	12	3645	7	2	28.5714
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.9329	99.6718	98.2049	68.8794	911	3	930	17	0	0.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.6811	99.6718	97.7099	74.8698	911	3	896	21	0	0.0000
ltrigg-rtg1	SNP	tv	HG002complexvar	het	99.7971	99.6716	99.9230	21.1569	150239	495	150457	116	36	31.0345
ltrigg-rtg2	SNP	ti	map_l100_m1_e0	homalt	99.8049	99.6715	99.9386	57.1476	17901	59	17900	11	11	100.0000
bgallagher-sentieon	SNP	tv	map_siren	het	99.3778	99.6714	99.0859	61.4179	28515	94	28510	263	27	10.2662
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.3611	99.6713	97.0850	34.4289	2729	9	2731	82	76	92.6829
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6996	99.6713	99.7279	30.4782	2729	9	2566	7	3	42.8571
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7257	99.6711	99.7805	65.7905	909	3	909	2	1	50.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6711	99.6711	99.6711	66.8845	909	3	909	3	3	100.0000
raldana-dualsentieon	SNP	tv	map_l125_m2_e1	homalt	99.7857	99.6707	99.9010	65.8803	6054	20	6054	6	3	50.0000
egarrison-hhga	SNP	tv	map_l125_m2_e1	homalt	99.7940	99.6707	99.9175	69.5482	6054	20	6054	5	5	100.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7116	99.6705	99.7527	66.8941	4840	16	4840	12	9	75.0000
jlack-gatk	INDEL	I6_15	HG002complexvar	homalt	97.1497	99.6705	94.7533	55.9047	1210	4	1210	67	66	98.5075
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7013	99.6705	99.7321	66.3966	4840	16	4840	13	10	76.9231
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7426	99.6705	99.8147	66.5588	4840	16	4849	9	8	88.8889
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7116	99.6705	99.7527	66.7352	4840	16	4840	12	10	83.3333
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6705	99.6705	99.6705	66.2895	4840	16	4840	16	13	81.2500
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6701	99.9632	59.9499	10875	36	10872	4	3	75.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5197	99.6701	99.3697	56.7552	3626	12	3626	23	21	91.3043
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7844	99.6701	99.8990	60.1508	10875	36	10875	11	9	81.8182
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6838	99.6701	99.6976	61.7359	10875	36	10878	33	21	63.6364
cchapple-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.6596	99.6701	97.6694	53.9900	3626	12	3604	86	85	98.8372
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7367	99.6698	99.8037	67.8161	9660	32	9660	19	12	63.1579
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.6224	99.6697	99.5753	80.0565	4224	14	4220	18	10	55.5556
eyeh-varpipe	SNP	*	map_l100_m2_e1	het	98.0064	99.6695	96.3978	71.5205	46743	155	45226	1690	34	2.0118
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4669	99.6693	99.2653	55.9536	3918	13	3918	29	0	0.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	74.2163	2409	8	2409	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8342	99.6690	100.0000	72.9599	2409	8	2409	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	72.5387	2409	8	2409	1	1	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8105	99.6688	99.9525	54.4112	25275	84	25277	12	7	58.3333
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
cchapple-custom	SNP	*	HG002complexvar	homalt	99.8273	99.6680	99.9871	18.5601	287616	958	286343	37	32	86.4865
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.3583	99.6679	91.4059	82.1531	3902	13	3914	368	228	61.9565
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8082	99.6679	99.9488	76.8939	3902	13	3902	2	1	50.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.5950	99.6678	97.5451	34.2663	5100	17	5086	128	121	94.5312
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	87.6552	99.6678	78.2269	51.0842	600	2	600	167	166	99.4012
eyeh-varpipe	SNP	tv	map_l100_m0_e0	het	94.2875	99.6677	89.4585	75.0937	7198	24	7137	841	11	1.3080
egarrison-hhga	SNP	tv	map_l125_m2_e0	homalt	99.7920	99.6676	99.9167	69.5036	5997	20	5997	5	5	100.0000
raldana-dualsentieon	SNP	tv	map_l125_m2_e0	homalt	99.7837	99.6676	99.9000	65.8746	5997	20	5997	6	3	50.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7949	99.6672	99.9230	28.5321	3893	13	3892	3	1	33.3333

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