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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 221 222 223 224 225 226 227 228 229 ... 1720 1721 » 11201-11250 / 86044 show all
eyeh-varpipe	SNP	tv	map_l100_m0_e0	*	96.1232	99.6842	92.8078	73.2654	11049	35	11007	853	14	1.6413
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7968	99.6842	99.9096	55.6842	11049	35	11049	10	7	70.0000
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2011	99.6842	98.7226	58.1229	11049	35	11052	143	20	13.9860
hfeng-pmm2	INDEL	D6_15	*	homalt	99.3853	99.6838	99.0886	51.6854	6306	20	6306	58	54	93.1034
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5262	99.6838	99.3691	86.9359	1261	4	1260	8	6	75.0000
cchapple-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4715	99.6836	99.2603	56.9862	55455	176	55556	414	57	13.7681
rpoplin-dv42	SNP	tv	segdup	*	99.6835	99.6835	99.6834	91.0590	8505	27	8501	27	12	44.4444
hfeng-pmm2	SNP	tv	map_l250_m2_e1	homalt	99.4201	99.6829	99.1588	88.2127	943	3	943	8	4	50.0000
hfeng-pmm1	SNP	tv	map_l250_m2_e1	homalt	99.4201	99.6829	99.1588	88.1481	943	3	943	8	4	50.0000
ltrigg-rtg1	SNP	ti	HG002complexvar	het	99.8233	99.6823	99.9646	17.0356	313766	1000	313778	111	23	20.7207
hfeng-pmm3	SNP	*	map_l150_m0_e0	homalt	99.5725	99.6821	99.4632	76.5815	4076	13	4076	22	7	31.8182
eyeh-varpipe	SNP	*	map_l250_m0_e0	homalt	99.6776	99.6820	99.6732	93.5320	627	2	610	2	2	100.0000
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7273	99.6820	99.7726	43.0753	2194	7	2194	5	4	80.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7953	99.6820	99.9089	42.1191	2194	7	2194	2	2	100.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7953	99.6820	99.9089	42.1496	2194	7	2194	2	2	100.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7612	99.6819	99.8407	71.1771	1880	6	1880	3	2	66.6667
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6504	99.6818	99.6191	61.4842	55454	177	55443	212	23	10.8491
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.0365	3444	11	3444	1	0	0.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.3120	3444	11	3444	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6812	99.6520	39.8884	3439	11	3436	12	2	16.6667
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	94.3491	99.6812	89.5584	44.0081	3439	11	3448	402	4	0.9950
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7534	99.6812	99.8257	39.7409	3439	11	3436	6	2	33.3333
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	homalt	99.8051	99.6810	99.9295	59.8306	18435	59	18434	13	13	100.0000
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3876	99.6809	99.0961	47.6724	6248	20	6249	57	11	19.2982
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8400	99.6805	100.0000	34.5560	312	1	339	0	0
astatham-gatk	INDEL	D1_5	*	het	99.6974	99.6803	99.7145	58.9760	87294	280	87301	250	122	48.8000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8398	99.6802	100.0000	44.8107	4052	13	4052	0	0
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7907	99.6802	99.9014	44.8913	4052	13	4052	4	1	25.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7907	99.6802	99.9015	41.5683	4052	13	4057	4	3	75.0000
bgallagher-sentieon	SNP	ti	map_siren	*	99.6181	99.6801	99.5561	54.0168	100034	321	100019	446	66	14.7982
ghariani-varprowl	SNP	ti	HG002complexvar	het	99.4535	99.6801	99.2280	19.8744	313754	1007	313878	2442	84	3.4398
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7268	99.6801	99.7735	67.9777	9661	31	9691	22	18	81.8182
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	97.4327	99.6801	95.2844	41.6647	4674	15	4708	233	3	1.2876
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	95.1371	99.6801	90.9901	43.0795	4674	15	4393	435	14	3.2184
dgrover-gatk	INDEL	I1_5	*	het	99.6919	99.6799	99.7038	61.0342	78788	253	78770	234	135	57.6923
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8222	99.6798	99.9650	55.3292	17122	55	17119	6	2	33.3333
hfeng-pmm2	SNP	tv	map_l250_m2_e0	homalt	99.4146	99.6798	99.1507	88.1241	934	3	934	8	4	50.0000
hfeng-pmm1	SNP	tv	map_l250_m2_e0	homalt	99.4146	99.6798	99.1507	88.0623	934	3	934	8	4	50.0000
hfeng-pmm1	INDEL	I16_PLUS	*	homalt	98.2323	99.6797	96.8264	69.2499	1556	5	1556	51	49	96.0784
jmaeng-gatk	INDEL	I16_PLUS	*	homalt	97.5243	99.6797	95.4601	72.0843	1556	5	1556	74	69	93.2432
qzeng-custom	SNP	tv	func_cds	*	99.6678	99.6797	99.6560	35.7311	4357	14	4345	15	0	0.0000
astatham-gatk	INDEL	I16_PLUS	*	homalt	97.6467	99.6797	95.6950	72.0858	1556	5	1556	70	68	97.1429
ckim-vqsr	INDEL	I16_PLUS	*	homalt	97.7080	99.6797	95.8128	71.8495	1556	5	1556	68	67	98.5294
ckim-gatk	INDEL	I16_PLUS	*	homalt	97.7080	99.6797	95.8128	71.8495	1556	5	1556	68	67	98.5294
ckim-dragen	INDEL	I16_PLUS	*	homalt	97.0983	99.6797	94.6472	70.1850	1556	5	1556	88	85	96.5909
cchapple-custom	SNP	*	HG002complexvar	*	99.8003	99.6796	99.9214	18.6735	751964	2417	749599	590	426	72.2034
egarrison-hhga	SNP	*	segdup	*	99.6030	99.6793	99.5269	89.4388	27977	90	27977	133	40	30.0752
dgrover-gatk	SNP	*	map_siren	homalt	99.8121	99.6791	99.9455	50.4067	54979	177	54970	30	26	86.6667
dgrover-gatk	SNP	tv	HG002compoundhet	het	99.6470	99.6790	99.6151	55.4242	4658	15	4658	18	10	55.5556
ltrigg-rtg1	SNP	*	HG002complexvar	het	99.8148	99.6788	99.9511	18.4181	464005	1495	464235	227	59	25.9912

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