PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 220 221 222 223 224 225 226 227 228 ... 1720 1721 » 11151-11200 / 86044 show all
raldana-dualsentieon	SNP	ti	HG002complexvar	het	99.8369	99.6928	99.9815	16.7345	313799	967	313748	58	9	15.5172
gduggal-bwafb	SNP	*	segdup	homalt	99.7625	99.6928	99.8322	89.4414	10710	33	10710	18	18	100.0000
hfeng-pmm2	SNP	ti	HG002complexvar	het	99.8373	99.6928	99.9822	16.6591	313799	967	313749	56	7	12.5000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8206	99.6928	99.9487	29.2204	3894	12	3893	2	1	50.0000
egarrison-hhga	SNP	*	map_l125_m1_e0	homalt	99.8075	99.6924	99.9229	66.3441	16853	52	16853	13	13	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.7459	99.6917	97.8179	67.5313	18110	56	18110	404	391	96.7822
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7459	99.6917	97.8179	67.5313	18110	56	18110	404	391	96.7822
dgrover-gatk	SNP	ti	map_siren	homalt	99.8204	99.6914	99.9498	49.0891	37799	117	37793	19	17	89.4737
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6914	99.9417	52.6220	17124	53	17138	10	7	70.0000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5421	99.6910	99.3935	43.8031	10325	32	10325	63	62	98.4127
ltrigg-rtg2	SNP	*	map_l100_m2_e1	homalt	99.8127	99.6906	99.9351	60.3846	27710	86	27708	18	16	88.8889
bgallagher-sentieon	SNP	*	map_siren	*	99.5992	99.6902	99.5084	55.5562	145775	453	145752	720	102	14.1667
hfeng-pmm3	SNP	*	map_l100_m0_e0	homalt	99.7288	99.6902	99.7675	63.7304	11584	36	11584	27	10	37.0370
hfeng-pmm1	SNP	ti	HG002complexvar	het	99.8377	99.6899	99.9860	16.6225	313790	976	313739	44	10	22.7273
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7111	99.6899	99.7323	69.3066	4822	15	4843	13	10	76.9231
ckim-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5094	99.6893	99.3302	65.3964	27592	86	27582	186	18	9.6774
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7823	99.6892	99.8755	54.6328	1604	5	1604	2	1	50.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7512	99.6892	99.8133	54.3984	1604	5	1604	3	2	66.6667
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8444	99.6892	100.0000	52.3753	1604	5	1604	0	0
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4232	99.6886	99.1593	46.1734	6723	21	6723	57	1	1.7544
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6885	99.9447	54.6733	25280	79	25281	14	10	71.4286
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8348	99.6884	99.9816	59.7111	10877	34	10874	2	1	50.0000
rpoplin-dv42	SNP	*	map_siren	homalt	99.7831	99.6882	99.8783	53.6066	54984	172	54983	67	63	94.0299
hfeng-pmm3	SNP	ti	map_siren	*	99.7701	99.6881	99.8523	52.8057	100042	313	100027	148	25	16.8919
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7548	99.6881	99.8216	48.8361	6712	21	6714	12	8	66.6667
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7622	99.6881	99.8364	49.1224	6712	21	6714	11	6	54.5455
hfeng-pmm1	SNP	tv	map_l100_m0_e0	homalt	99.6880	99.6880	99.6880	65.4385	3834	12	3834	12	4	33.3333
hfeng-pmm2	SNP	tv	map_l100_m0_e0	homalt	99.6880	99.6880	99.6880	65.5500	3834	12	3834	12	4	33.3333
jli-custom	INDEL	*	segdup	homalt	99.4802	99.6875	99.2739	93.3014	957	3	957	7	6	85.7143
ltrigg-rtg2	SNP	*	map_l100_m2_e0	homalt	99.8108	99.6875	99.9344	60.3899	27437	86	27435	18	16	88.8889
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7211	99.6873	99.7550	36.7324	7332	23	7328	18	4	22.2222
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	73.8882	99.6873	58.6974	39.9145	5101	16	5200	3659	3622	98.9888
cchapple-custom	SNP	*	HG002complexvar	het	99.7839	99.6872	99.8808	18.7433	464041	1456	463256	553	394	71.2477
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6271	99.6871	99.5672	75.3638	33132	104	33126	144	110	76.3889
cchapple-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0130	99.6869	98.3480	64.2091	17513	55	17622	296	23	7.7703
eyeh-varpipe	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.3719	99.6869	95.1620	62.9872	17513	55	16385	833	63	7.5630
eyeh-varpipe	SNP	*	map_l125_m1_e0	*	98.7938	99.6867	97.9168	73.3897	45185	142	43853	933	38	4.0729
ckim-gatk	INDEL	I1_5	HG002complexvar	het	99.7716	99.6866	99.8566	58.0913	18132	57	18110	26	13	50.0000
astatham-gatk	SNP	*	func_cds	het	99.7982	99.6864	99.9102	26.1346	11126	35	11123	10	0	0.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6356	99.6862	97.6069	67.4063	18109	57	18109	444	421	94.8198
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6356	99.6862	97.6069	67.4063	18109	57	18109	444	421	94.8198
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3235	99.6859	98.9637	77.1327	952	3	955	10	1	10.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7904	99.6859	99.8951	79.4035	952	3	952	1	1	100.0000
gduggal-snapfb	SNP	*	HG002complexvar	homalt	99.5552	99.6857	99.4250	21.2913	287668	907	287733	1664	399	23.9784
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.9220	99.6855	98.1700	51.8185	2536	8	2575	48	0	0.0000
ltrigg-rtg2	SNP	*	map_l100_m1_e0	homalt	99.8127	99.6852	99.9406	57.7080	26918	85	26916	16	14	87.5000
cchapple-custom	SNP	ti	HG002complexvar	homalt	99.8348	99.6852	99.9849	17.4009	192854	609	192184	29	25	86.2069
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	96.1110	99.6849	92.7845	59.2169	9491	30	9490	738	734	99.4580
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7868	99.6845	99.8894	55.8752	25279	80	25282	28	15	53.5714
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.5224	99.6844	91.6941	50.1544	4738	15	4736	429	428	99.7669

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge